miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 5' -59.4 NC_003521.1 + 155135 0.66 0.845973
Target:  5'- cUGgaGaaccUGCGGCGCGUGCUGgaCGCc -3'
miRNA:   3'- -ACgaCa---ACGUCGUGCGCGGCgaGCGc -5'
14626 5' -59.4 NC_003521.1 + 197927 0.66 0.845973
Target:  5'- cGCUGg-GCuccagaucgacgGGCGCGCGCUugaGCUgCGCGa -3'
miRNA:   3'- aCGACaaCG------------UCGUGCGCGG---CGA-GCGC- -5'
14626 5' -59.4 NC_003521.1 + 183582 0.66 0.845973
Target:  5'- gGCcaacugGCcGCGCGagaGCCGCUCGCc -3'
miRNA:   3'- aCGacaa--CGuCGUGCg--CGGCGAGCGc -5'
14626 5' -59.4 NC_003521.1 + 120243 0.66 0.845973
Target:  5'- aGCcg--GCGGC-CGCGCCGUgcaUCGCc -3'
miRNA:   3'- aCGacaaCGUCGuGCGCGGCG---AGCGc -5'
14626 5' -59.4 NC_003521.1 + 127001 0.66 0.845973
Target:  5'- cGCUGcccgacgugGCGGUgcccgACGaCGCCGC-CGCGg -3'
miRNA:   3'- aCGACaa-------CGUCG-----UGC-GCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 127542 0.66 0.845973
Target:  5'- gUGCgGcgGCAGCACGCcgucgGCCagguGCUCgGCGa -3'
miRNA:   3'- -ACGaCaaCGUCGUGCG-----CGG----CGAG-CGC- -5'
14626 5' -59.4 NC_003521.1 + 35809 0.66 0.845973
Target:  5'- gGC-GUcGCGGCACGcCGUCGUuaGCGg -3'
miRNA:   3'- aCGaCAaCGUCGUGC-GCGGCGagCGC- -5'
14626 5' -59.4 NC_003521.1 + 42804 0.66 0.845973
Target:  5'- gGCg---GCuGCACGCGCCGCaacgGCa -3'
miRNA:   3'- aCGacaaCGuCGUGCGCGGCGag--CGc -5'
14626 5' -59.4 NC_003521.1 + 130356 0.66 0.845973
Target:  5'- gUGCg---GCcGCAgGCGCCGUgCGCGc -3'
miRNA:   3'- -ACGacaaCGuCGUgCGCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 74634 0.66 0.845973
Target:  5'- aGCggggUGguGCGCgggacccuggaGCGCCGCUCGg- -3'
miRNA:   3'- aCGaca-ACguCGUG-----------CGCGGCGAGCgc -5'
14626 5' -59.4 NC_003521.1 + 149061 0.66 0.845973
Target:  5'- cGCUGggcuucgacGCGGC-CGCGCU-CUCGCa -3'
miRNA:   3'- aCGACaa-------CGUCGuGCGCGGcGAGCGc -5'
14626 5' -59.4 NC_003521.1 + 145251 0.66 0.845205
Target:  5'- gGCUGccUGCAGgGCGCcuccucgGCCucggcggccaGCUCGCGc -3'
miRNA:   3'- aCGACa-ACGUCgUGCG-------CGG----------CGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 203592 0.66 0.838207
Target:  5'- cGCaacgUGCAGUugaGCGCGUCGC-CGCu -3'
miRNA:   3'- aCGaca-ACGUCG---UGCGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 45041 0.66 0.838207
Target:  5'- ---aGggGUcgagAGC-CGCGCCGCUCGUGc -3'
miRNA:   3'- acgaCaaCG----UCGuGCGCGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 211566 0.66 0.838207
Target:  5'- aGCca--GUAGCGCGCa-CGCUCGCGg -3'
miRNA:   3'- aCGacaaCGUCGUGCGcgGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 228238 0.66 0.838207
Target:  5'- cGCUGgucGUGGUggGUGCCGC-CGUGg -3'
miRNA:   3'- aCGACaa-CGUCGugCGCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 226336 0.66 0.838207
Target:  5'- gUGCa--UGguGCGCGCGCC-C-CGCGg -3'
miRNA:   3'- -ACGacaACguCGUGCGCGGcGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 31420 0.66 0.838207
Target:  5'- aUGCUGgcgUGCAGCAgGCGgaugaUGCgcagCGCc -3'
miRNA:   3'- -ACGACa--ACGUCGUgCGCg----GCGa---GCGc -5'
14626 5' -59.4 NC_003521.1 + 49008 0.66 0.838207
Target:  5'- gGCgucguagGggGCAGUACagucaCGCCGUUUGCGg -3'
miRNA:   3'- aCGa------CaaCGUCGUGc----GCGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 114932 0.66 0.838207
Target:  5'- aGCg---GCuGCugGagaGCUGCUCGCGc -3'
miRNA:   3'- aCGacaaCGuCGugCg--CGGCGAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.