miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 5' -59.4 NC_003521.1 + 156598 0.71 0.597865
Target:  5'- aGgUGgUGCAGCGCG-GCCuCUCGCGc -3'
miRNA:   3'- aCgACaACGUCGUGCgCGGcGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 167573 0.71 0.597865
Target:  5'- cGCagagGUUGCAGCGCGUGUCGauggagaGCGg -3'
miRNA:   3'- aCGa---CAACGUCGUGCGCGGCgag----CGC- -5'
14626 5' -59.4 NC_003521.1 + 116363 0.7 0.617427
Target:  5'- aGCgcg-GCGGCgaacGCGUGCCGC-CGCGg -3'
miRNA:   3'- aCGacaaCGUCG----UGCGCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 110809 0.7 0.617427
Target:  5'- cGCUGaaagccaGCGGCcguuGCGCGCCGC-CGCc -3'
miRNA:   3'- aCGACaa-----CGUCG----UGCGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 31914 0.7 0.637031
Target:  5'- cUGCggcagGCAGCGCGCGauGaCUCGCGc -3'
miRNA:   3'- -ACGacaa-CGUCGUGCGCggC-GAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 92630 0.7 0.637031
Target:  5'- cGCUGUuucuggacucggUGCAGCugGUGU-GCUaCGCGg -3'
miRNA:   3'- aCGACA------------ACGUCGugCGCGgCGA-GCGC- -5'
14626 5' -59.4 NC_003521.1 + 181451 0.7 0.64683
Target:  5'- gUGCUGc-GCGGCguccagcggcugGCGCGCCGCcUGCa -3'
miRNA:   3'- -ACGACaaCGUCG------------UGCGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 85250 0.7 0.64683
Target:  5'- uUGCUGcUGCAcCACcuccuGCGCCGgUCGCa -3'
miRNA:   3'- -ACGACaACGUcGUG-----CGCGGCgAGCGc -5'
14626 5' -59.4 NC_003521.1 + 116763 0.7 0.656619
Target:  5'- gGCUugUGCAGCGUGgGCCGCcgcCGCGg -3'
miRNA:   3'- aCGAcaACGUCGUGCgCGGCGa--GCGC- -5'
14626 5' -59.4 NC_003521.1 + 152318 0.7 0.656619
Target:  5'- gGCUGcgagucGCuGCGCGUGCCGCUCu-- -3'
miRNA:   3'- aCGACaa----CGuCGUGCGCGGCGAGcgc -5'
14626 5' -59.4 NC_003521.1 + 178789 0.7 0.656619
Target:  5'- cGUUGUUGCAGgACGgGCCcccgggcacCUCGUGg -3'
miRNA:   3'- aCGACAACGUCgUGCgCGGc--------GAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 175230 0.7 0.656619
Target:  5'- cUGCUGUUGCAGCuguUGCuGUCcCUgGCGg -3'
miRNA:   3'- -ACGACAACGUCGu--GCG-CGGcGAgCGC- -5'
14626 5' -59.4 NC_003521.1 + 88496 0.7 0.656619
Target:  5'- gGCggGUagaGCGGCACGCGCagCGaCUCGCa -3'
miRNA:   3'- aCGa-CAa--CGUCGUGCGCG--GC-GAGCGc -5'
14626 5' -59.4 NC_003521.1 + 90826 0.7 0.656619
Target:  5'- gGCgucGUcgUGCGGCggguGCGCGCCGCcCGUGc -3'
miRNA:   3'- aCGa--CA--ACGUCG----UGCGCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 36768 0.7 0.660531
Target:  5'- gUGCgacUGCGGCgacuggcagggccacGCGCugcggaGCCGCUCGCGg -3'
miRNA:   3'- -ACGacaACGUCG---------------UGCG------CGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 21345 0.69 0.665415
Target:  5'- gUGCUGcu-CAGCGCGCugcuaugGUCGCUCGUGc -3'
miRNA:   3'- -ACGACaacGUCGUGCG-------CGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 154637 0.69 0.666391
Target:  5'- gGCUucGUcaGCaAGCACGUGCCGCUgGCc -3'
miRNA:   3'- aCGA--CAa-CG-UCGUGCGCGGCGAgCGc -5'
14626 5' -59.4 NC_003521.1 + 43140 0.69 0.666391
Target:  5'- cGCUGggcguggaGguGCACGCGCUGgUgGCGc -3'
miRNA:   3'- aCGACaa------CguCGUGCGCGGCgAgCGC- -5'
14626 5' -59.4 NC_003521.1 + 183651 0.69 0.666391
Target:  5'- cGCUucGUgcUGCGGCACGCcgacgaccuGCCGCgCGUGg -3'
miRNA:   3'- aCGA--CA--ACGUCGUGCG---------CGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 1353 0.69 0.676137
Target:  5'- gGCUGggGCuGaACGCGCCGCggGCc -3'
miRNA:   3'- aCGACaaCGuCgUGCGCGGCGagCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.