miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 5' -59.4 NC_003521.1 + 59357 0.75 0.381556
Target:  5'- cGCUGcagGCGGCGCGCcaGCCGCUggacgcCGCGc -3'
miRNA:   3'- aCGACaa-CGUCGUGCG--CGGCGA------GCGC- -5'
14626 5' -59.4 NC_003521.1 + 65361 0.66 0.860966
Target:  5'- gUGCUGUccggGgAGacgGCGCGCCGCcgaUCGUa -3'
miRNA:   3'- -ACGACAa---CgUCg--UGCGCGGCG---AGCGc -5'
14626 5' -59.4 NC_003521.1 + 70256 0.67 0.796932
Target:  5'- aGCUGguggggUGCAGCACGgGCagg-CGCa -3'
miRNA:   3'- aCGACa-----ACGUCGUGCgCGgcgaGCGc -5'
14626 5' -59.4 NC_003521.1 + 73219 0.68 0.724213
Target:  5'- aGCgccUGCGGCgccucuGCGCGCCGCUCu-- -3'
miRNA:   3'- aCGacaACGUCG------UGCGCGGCGAGcgc -5'
14626 5' -59.4 NC_003521.1 + 74634 0.66 0.845973
Target:  5'- aGCggggUGguGCGCgggacccuggaGCGCCGCUCGg- -3'
miRNA:   3'- aCGaca-ACguCGUG-----------CGCGGCGAGCgc -5'
14626 5' -59.4 NC_003521.1 + 77074 0.67 0.80549
Target:  5'- cUGCuccuUGUcgaGCAGCAUGCGgCGCauggggUCGCGg -3'
miRNA:   3'- -ACG----ACAa--CGUCGUGCGCgGCG------AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 77085 0.74 0.430997
Target:  5'- cGCUGUUGCcGC-CgGCGCCGCUCa-- -3'
miRNA:   3'- aCGACAACGuCGuG-CGCGGCGAGcgc -5'
14626 5' -59.4 NC_003521.1 + 77502 0.68 0.742991
Target:  5'- cGCUagUGCcGCuCGCGCCGCUgacCGUGg -3'
miRNA:   3'- aCGAcaACGuCGuGCGCGGCGA---GCGC- -5'
14626 5' -59.4 NC_003521.1 + 85250 0.7 0.64683
Target:  5'- uUGCUGcUGCAcCACcuccuGCGCCGgUCGCa -3'
miRNA:   3'- -ACGACaACGUcGUG-----CGCGGCgAGCGc -5'
14626 5' -59.4 NC_003521.1 + 85670 0.71 0.593962
Target:  5'- aGCUGUUccgagccggcgucCAGCACGCGCCGCagGUu -3'
miRNA:   3'- aCGACAAc------------GUCGUGCGCGGCGagCGc -5'
14626 5' -59.4 NC_003521.1 + 86114 0.68 0.724213
Target:  5'- cGCUGgauggUGUucuccucGCGCGCGUCGCacaCGCGg -3'
miRNA:   3'- aCGACa----ACGu------CGUGCGCGGCGa--GCGC- -5'
14626 5' -59.4 NC_003521.1 + 87146 0.67 0.796932
Target:  5'- aGgUGUUGgAGCGgGCGCaGUUCGUGc -3'
miRNA:   3'- aCgACAACgUCGUgCGCGgCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 87253 0.67 0.813903
Target:  5'- gUGgUGgaGCGGCuguGCGCCGUgCGCGu -3'
miRNA:   3'- -ACgACaaCGUCGug-CGCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 87619 0.73 0.439597
Target:  5'- aGgUGUgGCAGCAgGUGCCGC-CGCa -3'
miRNA:   3'- aCgACAaCGUCGUgCGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 87715 0.67 0.779415
Target:  5'- cUGCUGccGUcGCGCGCGCCcgGCggCGUGg -3'
miRNA:   3'- -ACGACaaCGuCGUGCGCGG--CGa-GCGC- -5'
14626 5' -59.4 NC_003521.1 + 88496 0.7 0.656619
Target:  5'- gGCggGUagaGCGGCACGCGCagCGaCUCGCa -3'
miRNA:   3'- aCGa-CAa--CGUCGUGCGCG--GC-GAGCGc -5'
14626 5' -59.4 NC_003521.1 + 89046 0.66 0.856546
Target:  5'- aUGCUGUaccUGCAG-GCGCGCCacaGCUgccuggagaucgucaCGCGc -3'
miRNA:   3'- -ACGACA---ACGUCgUGCGCGG---CGA---------------GCGC- -5'
14626 5' -59.4 NC_003521.1 + 90826 0.7 0.656619
Target:  5'- gGCgucGUcgUGCGGCggguGCGCGCCGCcCGUGc -3'
miRNA:   3'- aCGa--CA--ACGUCG----UGCGCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 91000 0.78 0.242354
Target:  5'- cUGCUGUUGCAGCugcagcaggucggucACGgccgGCCGUUCGCGg -3'
miRNA:   3'- -ACGACAACGUCG---------------UGCg---CGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 91456 0.66 0.860966
Target:  5'- aUGCgc--GCAuaCGCGCGCaGCUCGCGg -3'
miRNA:   3'- -ACGacaaCGUc-GUGCGCGgCGAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.