miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 5' -59.4 NC_003521.1 + 239377 0.67 0.788238
Target:  5'- gUGCUGccacCGGCG-GCGCaGCUCGCGg -3'
miRNA:   3'- -ACGACaac-GUCGUgCGCGgCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 233073 0.72 0.50235
Target:  5'- cUGCUGggacUGCcGC-CGCcuccGCCGCUCGCGc -3'
miRNA:   3'- -ACGACa---ACGuCGuGCG----CGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 228238 0.66 0.838207
Target:  5'- cGCUGgucGUGGUggGUGCCGC-CGUGg -3'
miRNA:   3'- aCGACaa-CGUCGugCGCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 226336 0.66 0.838207
Target:  5'- gUGCa--UGguGCGCGCGCC-C-CGCGg -3'
miRNA:   3'- -ACGacaACguCGUGCGCGGcGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 225972 0.71 0.568709
Target:  5'- cGCUGUUGgc-CACGCGCCGCaCGUa -3'
miRNA:   3'- aCGACAACgucGUGCGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 225880 0.69 0.685849
Target:  5'- gUGCUccaUGCGcGUcugGCGCuGCCGCUCGCGc -3'
miRNA:   3'- -ACGAca-ACGU-CG---UGCG-CGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 225757 1.08 0.002587
Target:  5'- gUGCUGUUGCAGCACGCGCCGCUCGCGc -3'
miRNA:   3'- -ACGACAACGUCGUGCGCGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 225494 0.66 0.853562
Target:  5'- cUGCUGcacCAGCGCGCugaucacCCGCUCgGCGc -3'
miRNA:   3'- -ACGACaacGUCGUGCGc------GGCGAG-CGC- -5'
14626 5' -59.4 NC_003521.1 + 225004 0.67 0.796932
Target:  5'- cGCacUUGCccAGCACGaugaGCCGCUCgGCGc -3'
miRNA:   3'- aCGacAACG--UCGUGCg---CGGCGAG-CGC- -5'
14626 5' -59.4 NC_003521.1 + 224246 0.68 0.749482
Target:  5'- cGCUGUcgaacauggugaaaUGCAgGCGCGCGCC-CUCa-- -3'
miRNA:   3'- aCGACA--------------ACGU-CGUGCGCGGcGAGcgc -5'
14626 5' -59.4 NC_003521.1 + 223657 0.66 0.830269
Target:  5'- aGCUGc--CAGCGCuGCGCCucggcCUCGCGc -3'
miRNA:   3'- aCGACaacGUCGUG-CGCGGc----GAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 222588 0.71 0.588115
Target:  5'- cGCUG--GCGGaugaaaACGCGCaGCUCGCGg -3'
miRNA:   3'- aCGACaaCGUCg-----UGCGCGgCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 211698 0.67 0.779415
Target:  5'- gUGCUGgaUGUAGCA-GCGCaGCgCGCGg -3'
miRNA:   3'- -ACGACa-ACGUCGUgCGCGgCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 211566 0.66 0.838207
Target:  5'- aGCca--GUAGCGCGCa-CGCUCGCGg -3'
miRNA:   3'- aCGacaaCGUCGUGCGcgGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 210480 0.67 0.788238
Target:  5'- -uUUG-UGguGCGCGcCGCCGaCUCGCu -3'
miRNA:   3'- acGACaACguCGUGC-GCGGC-GAGCGc -5'
14626 5' -59.4 NC_003521.1 + 207774 0.66 0.830269
Target:  5'- cGCUGg-GCGGCauccACGUGCUGCUCuaugGCa -3'
miRNA:   3'- aCGACaaCGUCG----UGCGCGGCGAG----CGc -5'
14626 5' -59.4 NC_003521.1 + 205187 0.69 0.704184
Target:  5'- cGCUc--GCAGCGCGUGCgggaccugcgaaaCGCUCGCc -3'
miRNA:   3'- aCGAcaaCGUCGUGCGCG-------------GCGAGCGc -5'
14626 5' -59.4 NC_003521.1 + 203592 0.66 0.838207
Target:  5'- cGCaacgUGCAGUugaGCGCGUCGC-CGCu -3'
miRNA:   3'- aCGaca-ACGUCG---UGCGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 202401 0.68 0.742991
Target:  5'- cUGCaacaGUUGCAGCAacCGC-CCGUUCGgGg -3'
miRNA:   3'- -ACGa---CAACGUCGU--GCGcGGCGAGCgC- -5'
14626 5' -59.4 NC_003521.1 + 198800 0.66 0.853562
Target:  5'- cUGCgugGUgccgGCGGCGucuguCGUGCCGC-CGUGu -3'
miRNA:   3'- -ACGa--CAa---CGUCGU-----GCGCGGCGaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.