miRNA display CGI


Results 1 - 20 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 5' -59.4 NC_003521.1 + 355 0.66 0.830269
Target:  5'- aGCUGccggagGCGGCGCcuGCGaCCGCUgcccgccucaCGCGg -3'
miRNA:   3'- aCGACaa----CGUCGUG--CGC-GGCGA----------GCGC- -5'
14626 5' -59.4 NC_003521.1 + 1353 0.69 0.676137
Target:  5'- gGCUGggGCuGaACGCGCCGCggGCc -3'
miRNA:   3'- aCGACaaCGuCgUGCGCGGCGagCGc -5'
14626 5' -59.4 NC_003521.1 + 2173 0.68 0.742991
Target:  5'- cUGCaacaGUUGCAGCAacCGC-CCGUUCGgGg -3'
miRNA:   3'- -ACGa---CAACGUCGU--GCGcGGCGAGCgC- -5'
14626 5' -59.4 NC_003521.1 + 4366 0.68 0.761413
Target:  5'- cGCUcaucGCGGCcCGCGucCCGCUCGCu -3'
miRNA:   3'- aCGAcaa-CGUCGuGCGC--GGCGAGCGc -5'
14626 5' -59.4 NC_003521.1 + 5529 0.67 0.822165
Target:  5'- aGCgacgGUgacgGCAGCcgGCGCgGCCGC-CGCc -3'
miRNA:   3'- aCGa---CAa---CGUCG--UGCG-CGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 8416 0.68 0.77047
Target:  5'- cGCUGgcGUuGC-CGUGCCGCagGCGc -3'
miRNA:   3'- aCGACaaCGuCGuGCGCGGCGagCGC- -5'
14626 5' -59.4 NC_003521.1 + 15656 0.68 0.733642
Target:  5'- aGCg---GCAGCACaGCGCCGagguggugCGCGa -3'
miRNA:   3'- aCGacaaCGUCGUG-CGCGGCga------GCGC- -5'
14626 5' -59.4 NC_003521.1 + 15895 0.68 0.730821
Target:  5'- gGCg---GCAGCACGCGCCuGUacaucuacgagcccUCGCa -3'
miRNA:   3'- aCGacaaCGUCGUGCGCGG-CG--------------AGCGc -5'
14626 5' -59.4 NC_003521.1 + 18165 0.66 0.853562
Target:  5'- aUGCUGg-GCAGCGuggagGCGCUGCgCGCc -3'
miRNA:   3'- -ACGACaaCGUCGUg----CGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 20733 0.71 0.549467
Target:  5'- cGCUGgcggUGCAucagcugcguGUACGCGCUGCUgGUGc -3'
miRNA:   3'- aCGACa---ACGU----------CGUGCGCGGCGAgCGC- -5'
14626 5' -59.4 NC_003521.1 + 21345 0.69 0.665415
Target:  5'- gUGCUGcu-CAGCGCGCugcuaugGUCGCUCGUGc -3'
miRNA:   3'- -ACGACaacGUCGUGCG-------CGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 30638 0.67 0.80549
Target:  5'- cGCcaccgGCGGCGCGC-CUGCUCGUc -3'
miRNA:   3'- aCGacaa-CGUCGUGCGcGGCGAGCGc -5'
14626 5' -59.4 NC_003521.1 + 31420 0.66 0.838207
Target:  5'- aUGCUGgcgUGCAGCAgGCGgaugaUGCgcagCGCc -3'
miRNA:   3'- -ACGACa--ACGUCGUgCGCg----GCGa---GCGc -5'
14626 5' -59.4 NC_003521.1 + 31914 0.7 0.637031
Target:  5'- cUGCggcagGCAGCGCGCGauGaCUCGCGc -3'
miRNA:   3'- -ACGacaa-CGUCGUGCGCggC-GAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 33444 0.68 0.761413
Target:  5'- aGCUGcUGgGGCuCGCGCUGUUCuCGg -3'
miRNA:   3'- aCGACaACgUCGuGCGCGGCGAGcGC- -5'
14626 5' -59.4 NC_003521.1 + 33940 0.68 0.742991
Target:  5'- cUGCUG-UGCGGCGUGCGCgGCgaGCa -3'
miRNA:   3'- -ACGACaACGUCGUGCGCGgCGagCGc -5'
14626 5' -59.4 NC_003521.1 + 35752 0.68 0.77047
Target:  5'- aUGCgGUUGCGGCugGaCGCUccacaGCgugCGCa -3'
miRNA:   3'- -ACGaCAACGUCGugC-GCGG-----CGa--GCGc -5'
14626 5' -59.4 NC_003521.1 + 35809 0.66 0.845973
Target:  5'- gGC-GUcGCGGCACGcCGUCGUuaGCGg -3'
miRNA:   3'- aCGaCAaCGUCGUGC-GCGGCGagCGC- -5'
14626 5' -59.4 NC_003521.1 + 35820 0.66 0.860234
Target:  5'- gGCgagaaccugGCGGUGCGCGCCGaggauguagaguucaUCGCGg -3'
miRNA:   3'- aCGacaa-----CGUCGUGCGCGGCg--------------AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 36399 0.73 0.448293
Target:  5'- cUGCUGgcgGCAGCGCGgGgCGUggauuUCGCGg -3'
miRNA:   3'- -ACGACaa-CGUCGUGCgCgGCG-----AGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.