Results 41 - 60 of 74 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 22739 | 0.69 | 0.632914 |
Target: 5'- uCGUCaccGGCGCcGCCGcCUCGCuguGCUuCGAg -3' miRNA: 3'- -GCAGa--CCGCGaCGGC-GAGCG---CGA-GCU- -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 139321 | 0.69 | 0.632914 |
Target: 5'- gGUC-GGcCGCgucugGCCGC-CGCuGCUCGAg -3' miRNA: 3'- gCAGaCC-GCGa----CGGCGaGCG-CGAGCU- -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 25623 | 0.69 | 0.632914 |
Target: 5'- cCGggCUGGCGCUGCUGg-CGCGUgaccaCGAc -3' miRNA: 3'- -GCa-GACCGCGACGGCgaGCGCGa----GCU- -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 196144 | 0.69 | 0.632914 |
Target: 5'- cCGcugCUGGCGCUGCCGUUCucauGUgGCUCc- -3' miRNA: 3'- -GCa--GACCGCGACGGCGAG----CG-CGAGcu -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 120903 | 0.69 | 0.632914 |
Target: 5'- gGUCgGGgGCgGCUGCUUGCGUUUGc -3' miRNA: 3'- gCAGaCCgCGaCGGCGAGCGCGAGCu -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 110293 | 0.69 | 0.632914 |
Target: 5'- gGUCUGGCGCaGCacgaaGUugUCGCGCUgGu -3' miRNA: 3'- gCAGACCGCGaCGg----CG--AGCGCGAgCu -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 97276 | 0.69 | 0.623339 |
Target: 5'- ---aUGGCgGCUGCUGCUCGuCGC-CGGc -3' miRNA: 3'- gcagACCG-CGACGGCGAGC-GCGaGCU- -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 165794 | 0.69 | 0.623339 |
Target: 5'- cCG-CUGGCGCUGCCG-UCGCaGUagGGg -3' miRNA: 3'- -GCaGACCGCGACGGCgAGCG-CGagCU- -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 167591 | 0.69 | 0.604213 |
Target: 5'- uGUCgauggagagcGGCGCgcagaggcGCCGCagGCGCUCGGg -3' miRNA: 3'- gCAGa---------CCGCGa-------CGGCGagCGCGAGCU- -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 14388 | 0.69 | 0.594674 |
Target: 5'- aCGagCUGGCGCgcuacGgCGUgUCGCGCUCGGa -3' miRNA: 3'- -GCa-GACCGCGa----CgGCG-AGCGCGAGCU- -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 214827 | 0.69 | 0.593722 |
Target: 5'- gGUCUgcGGCGCUGCgGCUucaucacCGUGCcCGAc -3' miRNA: 3'- gCAGA--CCGCGACGgCGA-------GCGCGaGCU- -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 56137 | 0.7 | 0.575675 |
Target: 5'- aCGUCgGGCGagUGCgGCUCGUGCUg-- -3' miRNA: 3'- -GCAGaCCGCg-ACGgCGAGCGCGAgcu -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 225756 | 0.7 | 0.575675 |
Target: 5'- aGUgCUGuuGCagcacgcGCCGCUCGCGCUCGc -3' miRNA: 3'- gCA-GACcgCGa------CGGCGAGCGCGAGCu -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 198762 | 0.7 | 0.547451 |
Target: 5'- uCG-CUGGuCGC-GCCGCUCGUGggCGAg -3' miRNA: 3'- -GCaGACC-GCGaCGGCGAGCGCgaGCU- -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 175302 | 0.7 | 0.547451 |
Target: 5'- gGUCUcGGCGUcGCCcaGCUgacaGCGCUCGAu -3' miRNA: 3'- gCAGA-CCGCGaCGG--CGAg---CGCGAGCU- -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 75986 | 0.7 | 0.544651 |
Target: 5'- aGUCUGGCGCcgGCCGCcgguUCcuccucccccgcggGCGCUCc- -3' miRNA: 3'- gCAGACCGCGa-CGGCG----AG--------------CGCGAGcu -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 105610 | 0.7 | 0.538137 |
Target: 5'- cCGcUCaGGCGCUGCaGCagggCGUGCUCGGg -3' miRNA: 3'- -GC-AGaCCGCGACGgCGa---GCGCGAGCU- -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 165939 | 0.7 | 0.538137 |
Target: 5'- cCGUCUcGCGCagcagcGCCGUgUCGUGCUCGGg -3' miRNA: 3'- -GCAGAcCGCGa-----CGGCG-AGCGCGAGCU- -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 195856 | 0.7 | 0.538137 |
Target: 5'- gCGUCa-GCGCUGUCGcCUCGCuCUCGGg -3' miRNA: 3'- -GCAGacCGCGACGGC-GAGCGcGAGCU- -5' |
|||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 53465 | 0.71 | 0.528879 |
Target: 5'- uCGUCgGGaUGCUGCUGCUCGaGCcCGAa -3' miRNA: 3'- -GCAGaCC-GCGACGGCGAGCgCGaGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home