miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 5' -49.5 NC_003521.1 + 80492 0.66 0.999503
Target:  5'- cGACGGAGgcCACCG-CgccgcccACGGCUCCg -3'
miRNA:   3'- -CUGCCUU--GUGGUaGaaau---UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 178026 0.66 0.999503
Target:  5'- cGCGGAucucCGCCGUCUUuuggggggugUAGCAcaccucGCCCUc -3'
miRNA:   3'- cUGCCUu---GUGGUAGAA----------AUUGU------CGGGG- -5'
14627 5' -49.5 NC_003521.1 + 127647 0.66 0.999503
Target:  5'- aGACGG-GCACC-UC----GCGGCCCa -3'
miRNA:   3'- -CUGCCuUGUGGuAGaaauUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 228202 0.67 0.999385
Target:  5'- --aGGAACGCacgCguuccACGGCCCCg -3'
miRNA:   3'- cugCCUUGUGguaGaaau-UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 62791 0.67 0.999385
Target:  5'- uGACGGGccCGgCGUCUUUGACgaccguGGCCgCCu -3'
miRNA:   3'- -CUGCCUu-GUgGUAGAAAUUG------UCGG-GG- -5'
14627 5' -49.5 NC_003521.1 + 231982 0.67 0.999245
Target:  5'- cGACGGuacgacacagGACACCAUCUccgagaccuUUucuACGGUCUCg -3'
miRNA:   3'- -CUGCC----------UUGUGGUAGA---------AAu--UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 168517 0.67 0.999245
Target:  5'- gGACGGcGACGCCAgcaggCU--GGCGGCCa- -3'
miRNA:   3'- -CUGCC-UUGUGGUa----GAaaUUGUCGGgg -5'
14627 5' -49.5 NC_003521.1 + 233392 0.67 0.999229
Target:  5'- -cCGGAGCugccgcuGCCGUCUc-GGCuccuGGCCCCg -3'
miRNA:   3'- cuGCCUUG-------UGGUAGAaaUUG----UCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 133009 0.67 0.999197
Target:  5'- gGACGGGGacaGCCGccaccggcacaguaUC---AGCAGCCCCc -3'
miRNA:   3'- -CUGCCUUg--UGGU--------------AGaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 74818 0.67 0.999077
Target:  5'- gGACGGAcgGCGCCGagCgc-GACGGCguCCCg -3'
miRNA:   3'- -CUGCCU--UGUGGUa-GaaaUUGUCG--GGG- -5'
14627 5' -49.5 NC_003521.1 + 98572 0.67 0.999077
Target:  5'- cGGCGGAccaGCUGUCgugguccGGCAGUCCCc -3'
miRNA:   3'- -CUGCCUug-UGGUAGaaa----UUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 139373 0.67 0.999077
Target:  5'- uGGCGaaGAGCGCCGugcUCUU----GGCCCCg -3'
miRNA:   3'- -CUGC--CUUGUGGU---AGAAauugUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 197008 0.67 0.999077
Target:  5'- cGGCGGcuGAC-CCGgcugCUgcgacaUGGCGGCCCCc -3'
miRNA:   3'- -CUGCC--UUGuGGUa---GAa-----AUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 59884 0.67 0.999077
Target:  5'- cGCGGAcuacggcaccgcGcCACCAUCg--AGCGGCCgCa -3'
miRNA:   3'- cUGCCU------------U-GUGGUAGaaaUUGUCGGgG- -5'
14627 5' -49.5 NC_003521.1 + 64704 0.67 0.999077
Target:  5'- cGCGGccAACGCCAUCUaUUcGCAGCUg- -3'
miRNA:   3'- cUGCC--UUGUGGUAGA-AAuUGUCGGgg -5'
14627 5' -49.5 NC_003521.1 + 17493 0.67 0.998879
Target:  5'- -cUGGGGCACCuAUCUgcGGCAGCgCg -3'
miRNA:   3'- cuGCCUUGUGG-UAGAaaUUGUCGgGg -5'
14627 5' -49.5 NC_003521.1 + 18091 0.67 0.998879
Target:  5'- aGACGGcGCGCgAgaug-AGCGGCCUCa -3'
miRNA:   3'- -CUGCCuUGUGgUagaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 90058 0.67 0.998879
Target:  5'- -cCGGGACGCCGacgcgcUCgcggAGCAGUCCg -3'
miRNA:   3'- cuGCCUUGUGGU------AGaaa-UUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 223110 0.67 0.998879
Target:  5'- uGCGGGAUggcgGCCGUCUcgcGCAGCaCCa -3'
miRNA:   3'- cUGCCUUG----UGGUAGAaauUGUCGgGG- -5'
14627 5' -49.5 NC_003521.1 + 188741 0.67 0.998879
Target:  5'- aGACGGggUuAUCGUaagugUAcCGGCCCCg -3'
miRNA:   3'- -CUGCCuuG-UGGUAgaa--AUuGUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.