miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 5' -49.5 NC_003521.1 + 127547 0.66 0.99974
Target:  5'- cGCGGAgcgaagACGCUguccgaguuggcaAUCUUccacagcaagAGCAGCCCCg -3'
miRNA:   3'- cUGCCU------UGUGG-------------UAGAAa---------UUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 208894 0.66 0.99968
Target:  5'- aACGGGagaguucguACACCAUCUUggcgaaGACGuaCCCCa -3'
miRNA:   3'- cUGCCU---------UGUGGUAGAAa-----UUGUc-GGGG- -5'
14627 5' -49.5 NC_003521.1 + 129735 0.66 0.99968
Target:  5'- cGACGcGAgcgcguccGCGCCGUCUUc-GCcGCCCUc -3'
miRNA:   3'- -CUGC-CU--------UGUGGUAGAAauUGuCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 63881 0.66 0.99968
Target:  5'- aGGCGGcGCGCCGggagCUgcAGCAGUugggcaCCCa -3'
miRNA:   3'- -CUGCCuUGUGGUa---GAaaUUGUCG------GGG- -5'
14627 5' -49.5 NC_003521.1 + 64991 0.66 0.99968
Target:  5'- cGACGu-GCGCCGcuUCUUgGACcgcGCCCCu -3'
miRNA:   3'- -CUGCcuUGUGGU--AGAAaUUGu--CGGGG- -5'
14627 5' -49.5 NC_003521.1 + 68738 0.66 0.999673
Target:  5'- cACGGAcuucaucACGCCGcCgcUGACGGUCCUg -3'
miRNA:   3'- cUGCCU-------UGUGGUaGaaAUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 225594 0.66 0.999665
Target:  5'- cGGCGGccucGCGCuCGgccgccuGCAGCCCCa -3'
miRNA:   3'- -CUGCCu---UGUG-GUagaaau-UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 2724 0.66 0.9996
Target:  5'- --gGGAGCGCCGUC----ACcGCCUCg -3'
miRNA:   3'- cugCCUUGUGGUAGaaauUGuCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 36006 0.66 0.9996
Target:  5'- cGACGGcGACGgaGg---UGGCGGCCCCa -3'
miRNA:   3'- -CUGCC-UUGUggUagaaAUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 74655 0.66 0.9996
Target:  5'- -cUGGAGCGCCG-CU----CGGCCCUg -3'
miRNA:   3'- cuGCCUUGUGGUaGAaauuGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 187358 0.66 0.9996
Target:  5'- --aGGAGCGCUcgCUggagGAC-GCCCUg -3'
miRNA:   3'- cugCCUUGUGGuaGAaa--UUGuCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 44811 0.66 0.9996
Target:  5'- aGCGGAugGCCGgagggCgacacgccACAGCUCCu -3'
miRNA:   3'- cUGCCUugUGGUa----Gaaau----UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 162340 0.66 0.9996
Target:  5'- aGGCGGcGACugCGggcgUGggcgcGCAGCCCCc -3'
miRNA:   3'- -CUGCC-UUGugGUagaaAU-----UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 156590 0.66 0.9996
Target:  5'- gGugGGGGuCACCAUCc--AGCAGCUa- -3'
miRNA:   3'- -CugCCUU-GUGGUAGaaaUUGUCGGgg -5'
14627 5' -49.5 NC_003521.1 + 234739 0.66 0.9996
Target:  5'- uGGCGGAACGCCGcCgcac-CGGCCg- -3'
miRNA:   3'- -CUGCCUUGUGGUaGaaauuGUCGGgg -5'
14627 5' -49.5 NC_003521.1 + 36560 0.66 0.9996
Target:  5'- ---cGAGCGCCGUCUccAGCcuCCCCa -3'
miRNA:   3'- cugcCUUGUGGUAGAaaUUGucGGGG- -5'
14627 5' -49.5 NC_003521.1 + 92645 0.66 0.999582
Target:  5'- cACGGAACcgagggucCCAUCcccccggucgAGCAGCCUCg -3'
miRNA:   3'- cUGCCUUGu-------GGUAGaaa-------UUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 25542 0.66 0.999573
Target:  5'- uGGCGGuggccugccuCugCAUCUcgcccuuccagcugUUGGCGGCCUCg -3'
miRNA:   3'- -CUGCCuu--------GugGUAGA--------------AAUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 178026 0.66 0.999503
Target:  5'- cGCGGAucucCGCCGUCUUuuggggggugUAGCAcaccucGCCCUc -3'
miRNA:   3'- cUGCCUu---GUGGUAGAA----------AUUGU------CGGGG- -5'
14627 5' -49.5 NC_003521.1 + 127647 0.66 0.999503
Target:  5'- aGACGG-GCACC-UC----GCGGCCCa -3'
miRNA:   3'- -CUGCCuUGUGGuAGaaauUGUCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.