miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 5' -49.5 NC_003521.1 + 27091 0.69 0.994847
Target:  5'- cACGGccuucugcGGCGCCGUCUggcugGGCAuCCCCg -3'
miRNA:   3'- cUGCC--------UUGUGGUAGAaa---UUGUcGGGG- -5'
14627 5' -49.5 NC_003521.1 + 31813 0.7 0.988284
Target:  5'- aGGCGuuuGAGCGCCGUCU----CGGCCCg -3'
miRNA:   3'- -CUGC---CUUGUGGUAGAaauuGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 35814 0.73 0.949924
Target:  5'- cGCGGcACGCCGUCgUUAGCGGgucUCCCg -3'
miRNA:   3'- cUGCCuUGUGGUAGaAAUUGUC---GGGG- -5'
14627 5' -49.5 NC_003521.1 + 36006 0.66 0.9996
Target:  5'- cGACGGcGACGgaGg---UGGCGGCCCCa -3'
miRNA:   3'- -CUGCC-UUGUggUagaaAUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 36560 0.66 0.9996
Target:  5'- ---cGAGCGCCGUCUccAGCcuCCCCa -3'
miRNA:   3'- cugcCUUGUGGUAGAaaUUGucGGGG- -5'
14627 5' -49.5 NC_003521.1 + 38244 0.71 0.976564
Target:  5'- gGGCGGGGCGgagacgcggcCCAgggucAGCAGCCCCa -3'
miRNA:   3'- -CUGCCUUGU----------GGUagaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 38477 0.68 0.998372
Target:  5'- uGGCGGuggGCGCCGgcguUCUUacuCgAGCCCCg -3'
miRNA:   3'- -CUGCCu--UGUGGU----AGAAauuG-UCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 39806 0.7 0.986739
Target:  5'- cGGCGGGGCGCCG-----GGCGGUCCUc -3'
miRNA:   3'- -CUGCCUUGUGGUagaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 39813 0.74 0.931043
Target:  5'- -gUGGGAC-CCGUCUUgGACAGUCUCg -3'
miRNA:   3'- cuGCCUUGuGGUAGAAaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 40933 0.72 0.965
Target:  5'- cGGgGGAGCGCCAUCUUaucugAACAcgaugucgucuuGCCUCg -3'
miRNA:   3'- -CUgCCUUGUGGUAGAAa----UUGU------------CGGGG- -5'
14627 5' -49.5 NC_003521.1 + 42729 0.68 0.998372
Target:  5'- aGGgGGcAGCACCGUCa--GAC-GCCCCc -3'
miRNA:   3'- -CUgCC-UUGUGGUAGaaaUUGuCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 44811 0.66 0.9996
Target:  5'- aGCGGAugGCCGgagggCgacacgccACAGCUCCu -3'
miRNA:   3'- cUGCCUugUGGUa----Gaaau----UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 46443 0.7 0.986739
Target:  5'- cGGCGGGGCugCGggggCUggu-CGGCCUCg -3'
miRNA:   3'- -CUGCCUUGugGUa---GAaauuGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 47364 0.71 0.978954
Target:  5'- aGACGGuAC-CCAUCUUgccgacgAAgGGUCCCa -3'
miRNA:   3'- -CUGCCuUGuGGUAGAAa------UUgUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 47897 0.72 0.973981
Target:  5'- aGugGGcuCGCCGUCc-UGAUGGCCCUg -3'
miRNA:   3'- -CugCCuuGUGGUAGaaAUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 53383 0.76 0.866829
Target:  5'- cGCGGcGCACCAgCUUcuGCAGCUCCu -3'
miRNA:   3'- cUGCCuUGUGGUaGAAauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 55018 0.68 0.998372
Target:  5'- aGGCGcAGCGCCAgCgucGGCGGCUCCg -3'
miRNA:   3'- -CUGCcUUGUGGUaGaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 55580 0.71 0.978954
Target:  5'- aGCGGAcacagcgaccACACCGUCUccucgucgUAcacGCAGUCCCg -3'
miRNA:   3'- cUGCCU----------UGUGGUAGAa-------AU---UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 55945 0.77 0.834816
Target:  5'- aGGCGcauGAGCACCGUgU---GCAGCCCCa -3'
miRNA:   3'- -CUGC---CUUGUGGUAgAaauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 56895 0.69 0.995569
Target:  5'- aGCGaGAGCugGCCGUCgc-GACAGCgCCg -3'
miRNA:   3'- cUGC-CUUG--UGGUAGaaaUUGUCGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.