miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 5' -49.5 NC_003521.1 + 788 0.69 0.995147
Target:  5'- cGGCGGAGgaccgcccggcgcccCGCCGagccucaacuUCUggAACAGCCCg -3'
miRNA:   3'- -CUGCCUU---------------GUGGU----------AGAaaUUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 2244 0.7 0.992094
Target:  5'- gGACGagcuGggUGCCGUCUUcGGCuacuGCCCCc -3'
miRNA:   3'- -CUGC----CuuGUGGUAGAAaUUGu---CGGGG- -5'
14627 5' -49.5 NC_003521.1 + 2409 0.68 0.997683
Target:  5'- cGAcCGcGAGCACUGgg---AGCGGCCCCg -3'
miRNA:   3'- -CU-GC-CUUGUGGUagaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 2724 0.66 0.9996
Target:  5'- --gGGAGCGCCGUC----ACcGCCUCg -3'
miRNA:   3'- cugCCUUGUGGUAGaaauUGuCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 5702 0.66 0.999746
Target:  5'- aACGG-GCGCCGUCaccggggUUAuguguACGGCCCg -3'
miRNA:   3'- cUGCCuUGUGGUAGa------AAU-----UGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 8190 0.7 0.992094
Target:  5'- aGACGcaGAGCauuACCAUaggUGGCAGUCCCg -3'
miRNA:   3'- -CUGC--CUUG---UGGUAgaaAUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 13465 0.7 0.986739
Target:  5'- cGGCGGuAGCGCCGUC---GACGGUCUg -3'
miRNA:   3'- -CUGCC-UUGUGGUAGaaaUUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 17019 0.73 0.954041
Target:  5'- cGGCGGcGCAggcCCGUCgucUGGCGGCCCa -3'
miRNA:   3'- -CUGCCuUGU---GGUAGaa-AUUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 17426 0.66 0.9998
Target:  5'- -cCGGGGCGCCAc-----ACGGCCCg -3'
miRNA:   3'- cuGCCUUGUGGUagaaauUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 17493 0.67 0.998879
Target:  5'- -cUGGGGCACCuAUCUgcGGCAGCgCg -3'
miRNA:   3'- cuGCCUUGUGG-UAGAaaUUGUCGgGg -5'
14627 5' -49.5 NC_003521.1 + 18091 0.67 0.998879
Target:  5'- aGACGGcGCGCgAgaug-AGCGGCCUCa -3'
miRNA:   3'- -CUGCCuUGUGgUagaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 18896 0.71 0.976564
Target:  5'- gGACGaGGCGCCG-Cg---GCAGCCCCg -3'
miRNA:   3'- -CUGCcUUGUGGUaGaaauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 22038 0.71 0.981158
Target:  5'- aGACGGAcuguuuuccGCGcCCAUCUUaGACcgAGCCCg -3'
miRNA:   3'- -CUGCCU---------UGU-GGUAGAAaUUG--UCGGGg -5'
14627 5' -49.5 NC_003521.1 + 22583 0.69 0.994847
Target:  5'- cGCGucGCACCcg---UGACGGCCCCu -3'
miRNA:   3'- cUGCcuUGUGGuagaaAUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 22692 0.71 0.981158
Target:  5'- uGACGGGgaucaggauuGCACCAguuUCgugGACAGCCUg -3'
miRNA:   3'- -CUGCCU----------UGUGGU---AGaaaUUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 24203 0.69 0.996206
Target:  5'- gGGCGGAACGUCGUCc--AACAGCagcaCCa -3'
miRNA:   3'- -CUGCCUUGUGGUAGaaaUUGUCGg---GG- -5'
14627 5' -49.5 NC_003521.1 + 25542 0.66 0.999573
Target:  5'- uGGCGGuggccugccuCugCAUCUcgcccuuccagcugUUGGCGGCCUCg -3'
miRNA:   3'- -CUGCCuu--------GugGUAGA--------------AAUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 25549 0.66 0.999746
Target:  5'- cGACGGcgGACGCUGUUgugcaGGCGGCCgCg -3'
miRNA:   3'- -CUGCC--UUGUGGUAGaaa--UUGUCGGgG- -5'
14627 5' -49.5 NC_003521.1 + 26002 0.66 0.99979
Target:  5'- cAUGGAAcCGCCGUCgccgcgccCGGCgCCCg -3'
miRNA:   3'- cUGCCUU-GUGGUAGaaauu---GUCG-GGG- -5'
14627 5' -49.5 NC_003521.1 + 26252 0.67 0.998645
Target:  5'- cACGGAACGCCAgcgCUgcuGCA-CCaCCa -3'
miRNA:   3'- cUGCCUUGUGGUa--GAaauUGUcGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.