miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 5' -49.5 NC_003521.1 + 194373 0.66 0.9998
Target:  5'- cGACGaGGCcgACCAgcccccGCAGCCCCg -3'
miRNA:   3'- -CUGCcUUG--UGGUagaaauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 128770 0.66 0.999746
Target:  5'- gGugGGGuucuccaggAUGCUGUCggUGGCGGCCuCCa -3'
miRNA:   3'- -CugCCU---------UGUGGUAGaaAUUGUCGG-GG- -5'
14627 5' -49.5 NC_003521.1 + 5702 0.66 0.999746
Target:  5'- aACGG-GCGCCGUCaccggggUUAuguguACGGCCCg -3'
miRNA:   3'- cUGCCuUGUGGUAGa------AAU-----UGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 57415 0.66 0.999746
Target:  5'- uGCGGucgccCACCGUCUcgcgGACGgGCUCCu -3'
miRNA:   3'- cUGCCuu---GUGGUAGAaa--UUGU-CGGGG- -5'
14627 5' -49.5 NC_003521.1 + 63881 0.66 0.99968
Target:  5'- aGGCGGcGCGCCGggagCUgcAGCAGUugggcaCCCa -3'
miRNA:   3'- -CUGCCuUGUGGUa---GAaaUUGUCG------GGG- -5'
14627 5' -49.5 NC_003521.1 + 68738 0.66 0.999673
Target:  5'- cACGGAcuucaucACGCCGcCgcUGACGGUCCUg -3'
miRNA:   3'- cUGCCU-------UGUGGUaGaaAUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 208894 0.66 0.99968
Target:  5'- aACGGGagaguucguACACCAUCUUggcgaaGACGuaCCCCa -3'
miRNA:   3'- cUGCCU---------UGUGGUAGAAa-----UUGUc-GGGG- -5'
14627 5' -49.5 NC_003521.1 + 80492 0.66 0.999503
Target:  5'- cGACGGAGgcCACCG-CgccgcccACGGCUCCg -3'
miRNA:   3'- -CUGCCUU--GUGGUaGaaau---UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 67040 0.66 0.9998
Target:  5'- uGACGGuguccGugGCCAUCgc--GCAGaCCCUc -3'
miRNA:   3'- -CUGCC-----UugUGGUAGaaauUGUC-GGGG- -5'
14627 5' -49.5 NC_003521.1 + 62215 0.66 0.9998
Target:  5'- aGGCGuuGGACGCCGUgCUgcagGAgGGCgCCCg -3'
miRNA:   3'- -CUGC--CUUGUGGUA-GAaa--UUgUCG-GGG- -5'
14627 5' -49.5 NC_003521.1 + 25549 0.66 0.999746
Target:  5'- cGACGGcgGACGCUGUUgugcaGGCGGCCgCg -3'
miRNA:   3'- -CUGCC--UUGUGGUAGaaa--UUGUCGGgG- -5'
14627 5' -49.5 NC_003521.1 + 64991 0.66 0.99968
Target:  5'- cGACGu-GCGCCGcuUCUUgGACcgcGCCCCu -3'
miRNA:   3'- -CUGCcuUGUGGU--AGAAaUUGu--CGGGG- -5'
14627 5' -49.5 NC_003521.1 + 225594 0.66 0.999665
Target:  5'- cGGCGGccucGCGCuCGgccgccuGCAGCCCCa -3'
miRNA:   3'- -CUGCCu---UGUG-GUagaaau-UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 92645 0.66 0.999582
Target:  5'- cACGGAACcgagggucCCAUCcccccggucgAGCAGCCUCg -3'
miRNA:   3'- cUGCCUUGu-------GGUAGaaa-------UUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 2724 0.66 0.9996
Target:  5'- --gGGAGCGCCGUC----ACcGCCUCg -3'
miRNA:   3'- cugCCUUGUGGUAGaaauUGuCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 178026 0.66 0.999503
Target:  5'- cGCGGAucucCGCCGUCUUuuggggggugUAGCAcaccucGCCCUc -3'
miRNA:   3'- cUGCCUu---GUGGUAGAA----------AUUGU------CGGGG- -5'
14627 5' -49.5 NC_003521.1 + 74655 0.66 0.9996
Target:  5'- -cUGGAGCGCCG-CU----CGGCCCUg -3'
miRNA:   3'- cuGCCUUGUGGUaGAaauuGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 226904 0.66 0.999746
Target:  5'- cGGCGGccAGCGCgGcCUcc-GCGGCCCCc -3'
miRNA:   3'- -CUGCC--UUGUGgUaGAaauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 180906 0.66 0.999503
Target:  5'- gGugGGAGC-CCAcCUUguacuGCGGCCgCu -3'
miRNA:   3'- -CugCCUUGuGGUaGAAau---UGUCGGgG- -5'
14627 5' -49.5 NC_003521.1 + 129735 0.66 0.99968
Target:  5'- cGACGcGAgcgcguccGCGCCGUCUUc-GCcGCCCUc -3'
miRNA:   3'- -CUGC-CU--------UGUGGUAGAAauUGuCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.