Results 21 - 40 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14627 | 5' | -49.5 | NC_003521.1 | + | 187358 | 0.66 | 0.9996 |
Target: 5'- --aGGAGCGCUcgCUggagGAC-GCCCUg -3' miRNA: 3'- cugCCUUGUGGuaGAaa--UUGuCGGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 36560 | 0.66 | 0.9996 |
Target: 5'- ---cGAGCGCCGUCUccAGCcuCCCCa -3' miRNA: 3'- cugcCUUGUGGUAGAaaUUGucGGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 62215 | 0.66 | 0.9998 |
Target: 5'- aGGCGuuGGACGCCGUgCUgcagGAgGGCgCCCg -3' miRNA: 3'- -CUGC--CUUGUGGUA-GAaa--UUgUCG-GGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 67040 | 0.66 | 0.9998 |
Target: 5'- uGACGGuguccGugGCCAUCgc--GCAGaCCCUc -3' miRNA: 3'- -CUGCC-----UugUGGUAGaaauUGUC-GGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 129735 | 0.66 | 0.99968 |
Target: 5'- cGACGcGAgcgcguccGCGCCGUCUUc-GCcGCCCUc -3' miRNA: 3'- -CUGC-CU--------UGUGGUAGAAauUGuCGGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 148639 | 0.66 | 0.9998 |
Target: 5'- gGAgGGGAgGCCAg----GGCAucGCCCCg -3' miRNA: 3'- -CUgCCUUgUGGUagaaaUUGU--CGGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 17426 | 0.66 | 0.9998 |
Target: 5'- -cCGGGGCGCCAc-----ACGGCCCg -3' miRNA: 3'- cuGCCUUGUGGUagaaauUGUCGGGg -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 5702 | 0.66 | 0.999746 |
Target: 5'- aACGG-GCGCCGUCaccggggUUAuguguACGGCCCg -3' miRNA: 3'- cUGCCuUGUGGUAGa------AAU-----UGUCGGGg -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 226904 | 0.66 | 0.999746 |
Target: 5'- cGGCGGccAGCGCgGcCUcc-GCGGCCCCc -3' miRNA: 3'- -CUGCC--UUGUGgUaGAaauUGUCGGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 72736 | 0.66 | 0.9998 |
Target: 5'- -uCGGucuuCGCCGaccUCU---GCAGCCCCc -3' miRNA: 3'- cuGCCuu--GUGGU---AGAaauUGUCGGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 64991 | 0.66 | 0.99968 |
Target: 5'- cGACGu-GCGCCGcuUCUUgGACcgcGCCCCu -3' miRNA: 3'- -CUGCcuUGUGGU--AGAAaUUGu--CGGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 26002 | 0.66 | 0.99979 |
Target: 5'- cAUGGAAcCGCCGUCgccgcgccCGGCgCCCg -3' miRNA: 3'- cUGCCUU-GUGGUAGaaauu---GUCG-GGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 234739 | 0.66 | 0.9996 |
Target: 5'- uGGCGGAACGCCGcCgcac-CGGCCg- -3' miRNA: 3'- -CUGCCUUGUGGUaGaaauuGUCGGgg -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 162340 | 0.66 | 0.9996 |
Target: 5'- aGGCGGcGACugCGggcgUGggcgcGCAGCCCCc -3' miRNA: 3'- -CUGCC-UUGugGUagaaAU-----UGUCGGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 129649 | 0.66 | 0.999503 |
Target: 5'- cGCGG--CGCCGUCgccggGGCGGCCgCg -3' miRNA: 3'- cUGCCuuGUGGUAGaaa--UUGUCGGgG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 127647 | 0.66 | 0.999503 |
Target: 5'- aGACGG-GCACC-UC----GCGGCCCa -3' miRNA: 3'- -CUGCCuUGUGGuAGaaauUGUCGGGg -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 57415 | 0.66 | 0.999746 |
Target: 5'- uGCGGucgccCACCGUCUcgcgGACGgGCUCCu -3' miRNA: 3'- cUGCCuu---GUGGUAGAaa--UUGU-CGGGG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 185546 | 0.66 | 0.9998 |
Target: 5'- uGACGGAGcCACCAag---GGCAGUCUg -3' miRNA: 3'- -CUGCCUU-GUGGUagaaaUUGUCGGGg -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 139763 | 0.66 | 0.999746 |
Target: 5'- cGACGGcagGAUccgGCCGUCg---GCGGCCgCCa -3' miRNA: 3'- -CUGCC---UUG---UGGUAGaaauUGUCGG-GG- -5' |
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14627 | 5' | -49.5 | NC_003521.1 | + | 128770 | 0.66 | 0.999746 |
Target: 5'- gGugGGGuucuccaggAUGCUGUCggUGGCGGCCuCCa -3' miRNA: 3'- -CugCCU---------UGUGGUAGaaAUUGUCGG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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