miRNA display CGI


Results 21 - 40 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 5' -49.5 NC_003521.1 + 25549 0.66 0.999746
Target:  5'- cGACGGcgGACGCUGUUgugcaGGCGGCCgCg -3'
miRNA:   3'- -CUGCC--UUGUGGUAGaaa--UUGUCGGgG- -5'
14627 5' -49.5 NC_003521.1 + 26002 0.66 0.99979
Target:  5'- cAUGGAAcCGCCGUCgccgcgccCGGCgCCCg -3'
miRNA:   3'- cUGCCUU-GUGGUAGaaauu---GUCG-GGG- -5'
14627 5' -49.5 NC_003521.1 + 185546 0.66 0.9998
Target:  5'- uGACGGAGcCACCAag---GGCAGUCUg -3'
miRNA:   3'- -CUGCCUU-GUGGUagaaaUUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 226904 0.66 0.999746
Target:  5'- cGGCGGccAGCGCgGcCUcc-GCGGCCCCc -3'
miRNA:   3'- -CUGCC--UUGUGgUaGAaauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 5702 0.66 0.999746
Target:  5'- aACGG-GCGCCGUCaccggggUUAuguguACGGCCCg -3'
miRNA:   3'- cUGCCuUGUGGUAGa------AAU-----UGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 166242 0.66 0.999746
Target:  5'- cGCGGGACGCCG-Cgcc-GCcGCUCCg -3'
miRNA:   3'- cUGCCUUGUGGUaGaaauUGuCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 140825 0.66 0.9998
Target:  5'- -gUGGAGaagaucuuCGCCGUCUUcAACAcGCCCa -3'
miRNA:   3'- cuGCCUU--------GUGGUAGAAaUUGU-CGGGg -5'
14627 5' -49.5 NC_003521.1 + 129735 0.66 0.99968
Target:  5'- cGACGcGAgcgcguccGCGCCGUCUUc-GCcGCCCUc -3'
miRNA:   3'- -CUGC-CU--------UGUGGUAGAAauUGuCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 67040 0.66 0.9998
Target:  5'- uGACGGuguccGugGCCAUCgc--GCAGaCCCUc -3'
miRNA:   3'- -CUGCC-----UugUGGUAGaaauUGUC-GGGG- -5'
14627 5' -49.5 NC_003521.1 + 62215 0.66 0.9998
Target:  5'- aGGCGuuGGACGCCGUgCUgcagGAgGGCgCCCg -3'
miRNA:   3'- -CUGC--CUUGUGGUA-GAaa--UUgUCG-GGG- -5'
14627 5' -49.5 NC_003521.1 + 64991 0.66 0.99968
Target:  5'- cGACGu-GCGCCGcuUCUUgGACcgcGCCCCu -3'
miRNA:   3'- -CUGCcuUGUGGU--AGAAaUUGu--CGGGG- -5'
14627 5' -49.5 NC_003521.1 + 63881 0.66 0.99968
Target:  5'- aGGCGGcGCGCCGggagCUgcAGCAGUugggcaCCCa -3'
miRNA:   3'- -CUGCCuUGUGGUa---GAaaUUGUCG------GGG- -5'
14627 5' -49.5 NC_003521.1 + 128770 0.66 0.999746
Target:  5'- gGugGGGuucuccaggAUGCUGUCggUGGCGGCCuCCa -3'
miRNA:   3'- -CugCCU---------UGUGGUAGaaAUUGUCGG-GG- -5'
14627 5' -49.5 NC_003521.1 + 127547 0.66 0.99974
Target:  5'- cGCGGAgcgaagACGCUguccgaguuggcaAUCUUccacagcaagAGCAGCCCCg -3'
miRNA:   3'- cUGCCU------UGUGG-------------UAGAAa---------UUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 72736 0.66 0.9998
Target:  5'- -uCGGucuuCGCCGaccUCU---GCAGCCCCc -3'
miRNA:   3'- cuGCCuu--GUGGU---AGAaauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 57415 0.66 0.999746
Target:  5'- uGCGGucgccCACCGUCUcgcgGACGgGCUCCu -3'
miRNA:   3'- cUGCCuu---GUGGUAGAaa--UUGU-CGGGG- -5'
14627 5' -49.5 NC_003521.1 + 127647 0.66 0.999503
Target:  5'- aGACGG-GCACC-UC----GCGGCCCa -3'
miRNA:   3'- -CUGCCuUGUGGuAGaaauUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 129649 0.66 0.999503
Target:  5'- cGCGG--CGCCGUCgccggGGCGGCCgCg -3'
miRNA:   3'- cUGCCuuGUGGUAGaaa--UUGUCGGgG- -5'
14627 5' -49.5 NC_003521.1 + 162340 0.66 0.9996
Target:  5'- aGGCGGcGACugCGggcgUGggcgcGCAGCCCCc -3'
miRNA:   3'- -CUGCC-UUGugGUagaaAU-----UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 234739 0.66 0.9996
Target:  5'- uGGCGGAACGCCGcCgcac-CGGCCg- -3'
miRNA:   3'- -CUGCCUUGUGGUaGaaauuGUCGGgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.