miRNA display CGI


Results 21 - 40 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 5' -49.5 NC_003521.1 + 80974 0.72 0.965
Target:  5'- cGACGGGGCGCgAguagcAGCGGCCCUu -3'
miRNA:   3'- -CUGCCUUGUGgUagaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 187219 0.72 0.965
Target:  5'- cGGCGGAGCagcagccucaGCCAagugagCUUcgaGGCGGCCCCg -3'
miRNA:   3'- -CUGCCUUG----------UGGUa-----GAAa--UUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 68357 0.72 0.968206
Target:  5'- cGACGGcGCACCG-CUgc--CGGCCCUg -3'
miRNA:   3'- -CUGCCuUGUGGUaGAaauuGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 91155 0.72 0.968206
Target:  5'- cGGCGGGGC-CCAcgaugUCg--GGCAGCCCg -3'
miRNA:   3'- -CUGCCUUGuGGU-----AGaaaUUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 164273 0.72 0.971197
Target:  5'- cGCGGAcCGCCGcUCcugGACAGCCaCCg -3'
miRNA:   3'- cUGCCUuGUGGU-AGaaaUUGUCGG-GG- -5'
14627 5' -49.5 NC_003521.1 + 47897 0.72 0.973981
Target:  5'- aGugGGcuCGCCGUCc-UGAUGGCCCUg -3'
miRNA:   3'- -CugCCuuGUGGUAGaaAUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 158716 0.72 0.975038
Target:  5'- --gGGGACACCGUCUUUguggccuaucacgagGACAGCUa- -3'
miRNA:   3'- cugCCUUGUGGUAGAAA---------------UUGUCGGgg -5'
14627 5' -49.5 NC_003521.1 + 184828 0.71 0.975554
Target:  5'- gGugGaGAACGCCGUggaccggcuGCGGCCCCu -3'
miRNA:   3'- -CugC-CUUGUGGUAgaaau----UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 18896 0.71 0.976564
Target:  5'- gGACGaGGCGCCG-Cg---GCAGCCCCg -3'
miRNA:   3'- -CUGCcUUGUGGUaGaaauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 38244 0.71 0.976564
Target:  5'- gGGCGGGGCGgagacgcggcCCAgggucAGCAGCCCCa -3'
miRNA:   3'- -CUGCCUUGU----------GGUagaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 238472 0.71 0.976564
Target:  5'- gGGCGGGGCGgagacgcggcCCAgggucAGCAGCCCCa -3'
miRNA:   3'- -CUGCCUUGU----------GGUagaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 149180 0.71 0.976564
Target:  5'- cGCGGGcACGCCggCUUUuAUAGCCUCc -3'
miRNA:   3'- cUGCCU-UGUGGuaGAAAuUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 47364 0.71 0.978954
Target:  5'- aGACGGuAC-CCAUCUUgccgacgAAgGGUCCCa -3'
miRNA:   3'- -CUGCCuUGuGGUAGAAa------UUgUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 140361 0.71 0.978954
Target:  5'- aACGGccguCACCAcucuUCUUcGGCGGCCCUg -3'
miRNA:   3'- cUGCCuu--GUGGU----AGAAaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 55580 0.71 0.978954
Target:  5'- aGCGGAcacagcgaccACACCGUCUccucgucgUAcacGCAGUCCCg -3'
miRNA:   3'- cUGCCU----------UGUGGUAGAa-------AU---UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 22038 0.71 0.981158
Target:  5'- aGACGGAcuguuuuccGCGcCCAUCUUaGACcgAGCCCg -3'
miRNA:   3'- -CUGCCU---------UGU-GGUAGAAaUUG--UCGGGg -5'
14627 5' -49.5 NC_003521.1 + 22692 0.71 0.981158
Target:  5'- uGACGGGgaucaggauuGCACCAguuUCgugGACAGCCUg -3'
miRNA:   3'- -CUGCCU----------UGUGGU---AGaaaUUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 173680 0.71 0.981158
Target:  5'- uACGGAGCccCCGUCcuguGCGGCCCg -3'
miRNA:   3'- cUGCCUUGu-GGUAGaaauUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 195266 0.71 0.983185
Target:  5'- cGACGGAugACGCCGUCUaUAA-AGCUCa -3'
miRNA:   3'- -CUGCCU--UGUGGUAGAaAUUgUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 123444 0.7 0.986246
Target:  5'- gGACGGAgGCGCCGUagcggggaccgcgggUUGGCgacuGGCCCCg -3'
miRNA:   3'- -CUGCCU-UGUGGUAga-------------AAUUG----UCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.