miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 5' -49.5 NC_003521.1 + 195266 0.71 0.983185
Target:  5'- cGACGGAugACGCCGUCUaUAA-AGCUCa -3'
miRNA:   3'- -CUGCCU--UGUGGUAGAaAUUgUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 40933 0.72 0.965
Target:  5'- cGGgGGAGCGCCAUCUUaucugAACAcgaugucgucuuGCCUCg -3'
miRNA:   3'- -CUgCCUUGUGGUAGAAa----UUGU------------CGGGG- -5'
14627 5' -49.5 NC_003521.1 + 80974 0.72 0.965
Target:  5'- cGACGGGGCGCgAguagcAGCGGCCCUu -3'
miRNA:   3'- -CUGCCUUGUGgUagaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 68357 0.72 0.968206
Target:  5'- cGACGGcGCACCG-CUgc--CGGCCCUg -3'
miRNA:   3'- -CUGCCuUGUGGUaGAaauuGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 164273 0.72 0.971197
Target:  5'- cGCGGAcCGCCGcUCcugGACAGCCaCCg -3'
miRNA:   3'- cUGCCUuGUGGU-AGaaaUUGUCGG-GG- -5'
14627 5' -49.5 NC_003521.1 + 238472 0.71 0.976564
Target:  5'- gGGCGGGGCGgagacgcggcCCAgggucAGCAGCCCCa -3'
miRNA:   3'- -CUGCCUUGU----------GGUagaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 47364 0.71 0.978954
Target:  5'- aGACGGuAC-CCAUCUUgccgacgAAgGGUCCCa -3'
miRNA:   3'- -CUGCCuUGuGGUAGAAa------UUgUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 55580 0.71 0.978954
Target:  5'- aGCGGAcacagcgaccACACCGUCUccucgucgUAcacGCAGUCCCg -3'
miRNA:   3'- cUGCCU----------UGUGGUAGAa-------AU---UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 22692 0.71 0.981158
Target:  5'- uGACGGGgaucaggauuGCACCAguuUCgugGACAGCCUg -3'
miRNA:   3'- -CUGCCU----------UGUGGU---AGaaaUUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 35814 0.73 0.949924
Target:  5'- cGCGGcACGCCGUCgUUAGCGGgucUCCCg -3'
miRNA:   3'- cUGCCuUGUGGUAGaAAUUGUC---GGGG- -5'
14627 5' -49.5 NC_003521.1 + 59939 0.73 0.940971
Target:  5'- cGACGuGGACGCCgAUC---AACAGCCCg -3'
miRNA:   3'- -CUGC-CUUGUGG-UAGaaaUUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 39813 0.74 0.931043
Target:  5'- -gUGGGAC-CCGUCUUgGACAGUCUCg -3'
miRNA:   3'- cuGCCUUGuGGUAGAAaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 219656 0.83 0.507797
Target:  5'- cGGCGGaGugACCAUCga-AACAGCCCCg -3'
miRNA:   3'- -CUGCC-UugUGGUAGaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 133171 0.79 0.732789
Target:  5'- -cCGGGACACCAgcagUGGCGGCCUCg -3'
miRNA:   3'- cuGCCUUGUGGUagaaAUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 196744 0.78 0.781275
Target:  5'- cGGCGGcgccuGCACCGUCU---GCuGCCCCg -3'
miRNA:   3'- -CUGCCu----UGUGGUAGAaauUGuCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 55945 0.77 0.834816
Target:  5'- aGGCGcauGAGCACCGUgU---GCAGCCCCa -3'
miRNA:   3'- -CUGC---CUUGUGGUAgAaauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 141586 0.76 0.859136
Target:  5'- cGACGcGcGCACCGUCagcuACAGCCCUa -3'
miRNA:   3'- -CUGC-CuUGUGGUAGaaauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 53383 0.76 0.866829
Target:  5'- cGCGGcGCACCAgCUUcuGCAGCUCCu -3'
miRNA:   3'- cUGCCuUGUGGUaGAAauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 105041 0.75 0.895369
Target:  5'- gGACGGccCGCCcgUgcgcgAGCAGCCCCa -3'
miRNA:   3'- -CUGCCuuGUGGuaGaaa--UUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 126963 0.74 0.92571
Target:  5'- cGCGGAacccGCGCCGUCgucgccGGCcGCCCCg -3'
miRNA:   3'- cUGCCU----UGUGGUAGaaa---UUGuCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.