miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 5' -49.5 NC_003521.1 + 165997 0.77 0.79977
Target:  5'- cGCGGGACGCCGUCgcgcuCGGCgCCg -3'
miRNA:   3'- cUGCCUUGUGGUAGaaauuGUCGgGG- -5'
14627 5' -49.5 NC_003521.1 + 22038 0.71 0.981158
Target:  5'- aGACGGAcuguuuuccGCGcCCAUCUUaGACcgAGCCCg -3'
miRNA:   3'- -CUGCCU---------UGU-GGUAGAAaUUG--UCGGGg -5'
14627 5' -49.5 NC_003521.1 + 13465 0.7 0.986739
Target:  5'- cGGCGGuAGCGCCGUC---GACGGUCUg -3'
miRNA:   3'- -CUGCC-UUGUGGUAGaaaUUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 194373 0.66 0.9998
Target:  5'- cGACGaGGCcgACCAgcccccGCAGCCCCg -3'
miRNA:   3'- -CUGCcUUG--UGGUagaaauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 175459 0.73 0.945568
Target:  5'- cGGCGGcGCGCCGUCUccccgGACAGCacguCCu -3'
miRNA:   3'- -CUGCCuUGUGGUAGAaa---UUGUCGg---GG- -5'
14627 5' -49.5 NC_003521.1 + 17019 0.73 0.954041
Target:  5'- cGGCGGcGCAggcCCGUCgucUGGCGGCCCa -3'
miRNA:   3'- -CUGCCuUGU---GGUAGaa-AUUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 187219 0.72 0.965
Target:  5'- cGGCGGAGCagcagccucaGCCAagugagCUUcgaGGCGGCCCCg -3'
miRNA:   3'- -CUGCCUUG----------UGGUa-----GAAa--UUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 91155 0.72 0.968206
Target:  5'- cGGCGGGGC-CCAcgaugUCg--GGCAGCCCg -3'
miRNA:   3'- -CUGCCUUGuGGU-----AGaaaUUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 184828 0.71 0.975554
Target:  5'- gGugGaGAACGCCGUggaccggcuGCGGCCCCu -3'
miRNA:   3'- -CugC-CUUGUGGUAgaaau----UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 173680 0.71 0.981158
Target:  5'- uACGGAGCccCCGUCcuguGCGGCCCg -3'
miRNA:   3'- cUGCCUUGu-GGUAGaaauUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 18896 0.71 0.976564
Target:  5'- gGACGaGGCGCCG-Cg---GCAGCCCCg -3'
miRNA:   3'- -CUGCcUUGUGGUaGaaauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 158716 0.72 0.975038
Target:  5'- --gGGGACACCGUCUUUguggccuaucacgagGACAGCUa- -3'
miRNA:   3'- cugCCUUGUGGUAGAAA---------------UUGUCGGgg -5'
14627 5' -49.5 NC_003521.1 + 115553 0.77 0.808788
Target:  5'- uGACGGAGCGCCGUgCUgcgcgGACGuugaucucGCCCCc -3'
miRNA:   3'- -CUGCCUUGUGGUA-GAaa---UUGU--------CGGGG- -5'
14627 5' -49.5 NC_003521.1 + 149180 0.71 0.976564
Target:  5'- cGCGGGcACGCCggCUUUuAUAGCCUCc -3'
miRNA:   3'- cUGCCU-UGUGGuaGAAAuUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 117784 0.76 0.874304
Target:  5'- uGCGGAucuauCGCCGUUUcu-ACGGCCCCu -3'
miRNA:   3'- cUGCCUu----GUGGUAGAaauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 47897 0.72 0.973981
Target:  5'- aGugGGcuCGCCGUCc-UGAUGGCCCUg -3'
miRNA:   3'- -CugCCuuGUGGUAGaaAUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 140361 0.71 0.978954
Target:  5'- aACGGccguCACCAcucuUCUUcGGCGGCCCUg -3'
miRNA:   3'- cUGCCuu--GUGGU----AGAAaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 123444 0.7 0.986246
Target:  5'- gGACGGAgGCGCCGUagcggggaccgcgggUUGGCgacuGGCCCCg -3'
miRNA:   3'- -CUGCCU-UGUGGUAga-------------AAUUG----UCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 111257 0.74 0.914306
Target:  5'- cGGCGGAGCAgCCAUCgu---CGGgCCCg -3'
miRNA:   3'- -CUGCCUUGU-GGUAGaaauuGUCgGGG- -5'
14627 5' -49.5 NC_003521.1 + 180642 0.72 0.961575
Target:  5'- cGCGcGcACACUGUCUgUAGCGGCUCCa -3'
miRNA:   3'- cUGC-CuUGUGGUAGAaAUUGUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.