miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 5' -49.5 NC_003521.1 + 240033 0.7 0.986739
Target:  5'- cGGCGGGGCGCCG-----GGCGGUCCUc -3'
miRNA:   3'- -CUGCCUUGUGGUagaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 238472 0.71 0.976564
Target:  5'- gGGCGGGGCGgagacgcggcCCAgggucAGCAGCCCCa -3'
miRNA:   3'- -CUGCCUUGU----------GGUagaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 236492 0.67 0.998645
Target:  5'- cGGCGGuGGCGCCAggcaugGACggucgAGCCCCc -3'
miRNA:   3'- -CUGCC-UUGUGGUagaaa-UUG-----UCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 234739 0.66 0.9996
Target:  5'- uGGCGGAACGCCGcCgcac-CGGCCg- -3'
miRNA:   3'- -CUGCCUUGUGGUaGaaauuGUCGGgg -5'
14627 5' -49.5 NC_003521.1 + 233392 0.67 0.999229
Target:  5'- -cCGGAGCugccgcuGCCGUCUc-GGCuccuGGCCCCg -3'
miRNA:   3'- cuGCCUUG-------UGGUAGAaaUUG----UCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 231982 0.67 0.999245
Target:  5'- cGACGGuacgacacagGACACCAUCUccgagaccuUUucuACGGUCUCg -3'
miRNA:   3'- -CUGCC----------UUGUGGUAGA---------AAu--UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 228465 0.67 0.998645
Target:  5'- aACGGcAC-CCAgaagCUgcuguuauagUAGCGGCCCCa -3'
miRNA:   3'- cUGCCuUGuGGUa---GAa---------AUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 228202 0.67 0.999385
Target:  5'- --aGGAACGCacgCguuccACGGCCCCg -3'
miRNA:   3'- cugCCUUGUGguaGaaau-UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 226904 0.66 0.999746
Target:  5'- cGGCGGccAGCGCgGcCUcc-GCGGCCCCc -3'
miRNA:   3'- -CUGCC--UUGUGgUaGAaauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 225926 1.14 0.010186
Target:  5'- uGACGGAACACCAUCUUUAACAGCCCCa -3'
miRNA:   3'- -CUGCCUUGUGGUAGAAAUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 225594 0.66 0.999665
Target:  5'- cGGCGGccucGCGCuCGgccgccuGCAGCCCCa -3'
miRNA:   3'- -CUGCCu---UGUG-GUagaaau-UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 223615 0.68 0.997683
Target:  5'- cGACGGcGACGCUcuUCUcucgccAUAGCCCCg -3'
miRNA:   3'- -CUGCC-UUGUGGu-AGAaau---UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 223110 0.67 0.998879
Target:  5'- uGCGGGAUggcgGCCGUCUcgcGCAGCaCCa -3'
miRNA:   3'- cUGCCUUG----UGGUAGAaauUGUCGgGG- -5'
14627 5' -49.5 NC_003521.1 + 222049 0.69 0.996206
Target:  5'- cGGCGGGggGCACCAgccgUCgc-AGCAGCgaCCCg -3'
miRNA:   3'- -CUGCCU--UGUGGU----AGaaaUUGUCG--GGG- -5'
14627 5' -49.5 NC_003521.1 + 219656 0.83 0.507797
Target:  5'- cGGCGGaGugACCAUCga-AACAGCCCCg -3'
miRNA:   3'- -CUGCC-UugUGGUAGaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 218725 0.7 0.988284
Target:  5'- cGGCGGGcgagaaGCGgCGUCgg-GACGGUCCCc -3'
miRNA:   3'- -CUGCCU------UGUgGUAGaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 216689 0.68 0.998053
Target:  5'- cGACGuuauaggcacGAACGCCcuccgaacGUCUcUGGCGGCCCg -3'
miRNA:   3'- -CUGC----------CUUGUGG--------UAGAaAUUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 212649 0.68 0.996766
Target:  5'- uGGCGGAGCAUgcagggUAUC---AGCAuGCCCCa -3'
miRNA:   3'- -CUGCCUUGUG------GUAGaaaUUGU-CGGGG- -5'
14627 5' -49.5 NC_003521.1 + 208894 0.66 0.99968
Target:  5'- aACGGGagaguucguACACCAUCUUggcgaaGACGuaCCCCa -3'
miRNA:   3'- cUGCCU---------UGUGGUAGAAa-----UUGUc-GGGG- -5'
14627 5' -49.5 NC_003521.1 + 206612 0.69 0.995569
Target:  5'- cACGG-GCGCCGUCUac-GCcGCCCUg -3'
miRNA:   3'- cUGCCuUGUGGUAGAaauUGuCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.