miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 5' -57 NC_003521.1 + 2610 0.69 0.822635
Target:  5'- ----aCGCCGUGCCGacGCCCaGGCu- -3'
miRNA:   3'- uauuaGUGGCACGGCauCGGG-CCGca -5'
14628 5' -57 NC_003521.1 + 42785 0.69 0.822635
Target:  5'- ----gCACC-UGcCCGUgcAGCCCGGCGg -3'
miRNA:   3'- uauuaGUGGcAC-GGCA--UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 239520 0.69 0.814252
Target:  5'- ---cUCGCCGgcGCCGUAGCggaaccauucgUCGGCGUc -3'
miRNA:   3'- uauuAGUGGCa-CGGCAUCG-----------GGCCGCA- -5'
14628 5' -57 NC_003521.1 + 32903 0.69 0.814252
Target:  5'- ----cCGCCGUGCCcgccgccCCCGGCGUa -3'
miRNA:   3'- uauuaGUGGCACGGcauc---GGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 95782 0.69 0.800516
Target:  5'- -cGGUCAUCGUGCCGcucGGCCacgcgaccagcgcguCGGCGa -3'
miRNA:   3'- uaUUAGUGGCACGGCa--UCGG---------------GCCGCa -5'
14628 5' -57 NC_003521.1 + 36759 0.69 0.797023
Target:  5'- ---cUCGCUGUccaaggacGCgCGUGGCCUGGCGg -3'
miRNA:   3'- uauuAGUGGCA--------CG-GCAUCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 151805 0.7 0.77923
Target:  5'- ---cUCACC--GCCGUGGCgCCGGUGg -3'
miRNA:   3'- uauuAGUGGcaCGGCAUCG-GGCCGCa -5'
14628 5' -57 NC_003521.1 + 146995 0.7 0.77923
Target:  5'- --cGUCACCuaGUGCCGU-GCCCGGa-- -3'
miRNA:   3'- uauUAGUGG--CACGGCAuCGGGCCgca -5'
14628 5' -57 NC_003521.1 + 180940 0.7 0.760939
Target:  5'- gGUGG-CGCgGUGCCGUAGUCC-GCGg -3'
miRNA:   3'- -UAUUaGUGgCACGGCAUCGGGcCGCa -5'
14628 5' -57 NC_003521.1 + 211073 0.7 0.742216
Target:  5'- ---cUCGCUcuGUcGCCGUuGCCCGGCGg -3'
miRNA:   3'- uauuAGUGG--CA-CGGCAuCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 152806 0.71 0.713469
Target:  5'- -cGGUCACCGgcagGUgGUacAGCUCGGCGUc -3'
miRNA:   3'- uaUUAGUGGCa---CGgCA--UCGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 39292 0.71 0.713469
Target:  5'- --cGUCGCCGgcGCCGUAGCggaaccauucgUCGGCGUc -3'
miRNA:   3'- uauUAGUGGCa-CGGCAUCG-----------GGCCGCA- -5'
14628 5' -57 NC_003521.1 + 26009 0.71 0.693963
Target:  5'- ----cCGCCGUcGCCGc-GCCCGGCGc -3'
miRNA:   3'- uauuaGUGGCA-CGGCauCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 212850 0.71 0.674261
Target:  5'- ----cCGCCGUgGCCGUGagcgccGCCUGGCGUu -3'
miRNA:   3'- uauuaGUGGCA-CGGCAU------CGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 193661 0.72 0.654428
Target:  5'- -aGAUCAUCGUGCuCGUcggcaAGCgCGGCGg -3'
miRNA:   3'- uaUUAGUGGCACG-GCA-----UCGgGCCGCa -5'
14628 5' -57 NC_003521.1 + 136758 0.72 0.644483
Target:  5'- uAUAGUCACCaacGUGCUGgcGCagaCGGCGUc -3'
miRNA:   3'- -UAUUAGUGG---CACGGCauCGg--GCCGCA- -5'
14628 5' -57 NC_003521.1 + 129622 0.72 0.634528
Target:  5'- -gAGUCGCCG-GCC---GCCCGGCGg -3'
miRNA:   3'- uaUUAGUGGCaCGGcauCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 61771 0.72 0.634528
Target:  5'- --cGUCACCGggaccGCCGccGGCuCCGGCGUg -3'
miRNA:   3'- uauUAGUGGCa----CGGCa-UCG-GGCCGCA- -5'
14628 5' -57 NC_003521.1 + 176061 0.72 0.628554
Target:  5'- -gGAUCGCCcgGUGCCGcgccggccggcgucuUGGCCaCGGCGUc -3'
miRNA:   3'- uaUUAGUGG--CACGGC---------------AUCGG-GCCGCA- -5'
14628 5' -57 NC_003521.1 + 192810 0.73 0.594763
Target:  5'- -gGAUCGCUGgcagcaGCCGcagaAGCCCGGCGg -3'
miRNA:   3'- uaUUAGUGGCa-----CGGCa---UCGGGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.