Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14628 | 5' | -57 | NC_003521.1 | + | 87269 | 0.67 | 0.876353 |
Target: 5'- ----gCGCCGUGCgCGUGGCCaacgGGCc- -3' miRNA: 3'- uauuaGUGGCACG-GCAUCGGg---CCGca -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 96772 | 0.67 | 0.876353 |
Target: 5'- -cGGUCGCCGUcGCCGccGGCagcagCGGCGg -3' miRNA: 3'- uaUUAGUGGCA-CGGCa-UCGg----GCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 133748 | 0.68 | 0.869255 |
Target: 5'- -----uGCUG-GCCGgcaGGCCCGGCGa -3' miRNA: 3'- uauuagUGGCaCGGCa--UCGGGCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 16287 | 0.68 | 0.869255 |
Target: 5'- cUGggCGCCGUggguGCCuaccGGCCCGGCGg -3' miRNA: 3'- uAUuaGUGGCA----CGGca--UCGGGCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 181229 | 0.68 | 0.867086 |
Target: 5'- -cGAUCGCCGUcguugaccacguagGCCacGUAGagaCCGGCGUu -3' miRNA: 3'- uaUUAGUGGCA--------------CGG--CAUCg--GGCCGCA- -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 147835 | 0.68 | 0.861956 |
Target: 5'- ----gCACgGUGCCGUgcAGCCgGGgGUg -3' miRNA: 3'- uauuaGUGgCACGGCA--UCGGgCCgCA- -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 204934 | 0.68 | 0.85446 |
Target: 5'- -------gCGUGCCGUGGCaCCGGCc- -3' miRNA: 3'- uauuagugGCACGGCAUCG-GGCCGca -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 28808 | 0.68 | 0.85446 |
Target: 5'- --cGUCACCGacgGCCaGUA-CCUGGCGUg -3' miRNA: 3'- uauUAGUGGCa--CGG-CAUcGGGCCGCA- -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 148082 | 0.68 | 0.85446 |
Target: 5'- cUGGUUcaggACCGUGCUcUGGuCCCGGCGc -3' miRNA: 3'- uAUUAG----UGGCACGGcAUC-GGGCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 217717 | 0.68 | 0.85446 |
Target: 5'- ----aCACUGUGCCGU--CCCGGCc- -3' miRNA: 3'- uauuaGUGGCACGGCAucGGGCCGca -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 54494 | 0.68 | 0.85446 |
Target: 5'- uUGAUgGCCG-GC---GGCCCGGCGUg -3' miRNA: 3'- uAUUAgUGGCaCGgcaUCGGGCCGCA- -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 220395 | 0.68 | 0.838903 |
Target: 5'- -gAAUCuCCGUGCCGUuuuuguacAGCCauGCGUc -3' miRNA: 3'- uaUUAGuGGCACGGCA--------UCGGgcCGCA- -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 96550 | 0.68 | 0.838903 |
Target: 5'- -gAGUCGCCGUGCUc--GCCCagcagacaGGCGUg -3' miRNA: 3'- uaUUAGUGGCACGGcauCGGG--------CCGCA- -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 33668 | 0.68 | 0.838903 |
Target: 5'- -gGAUCcagcgACCG-GCCGUGGCCCGcaCGUa -3' miRNA: 3'- uaUUAG-----UGGCaCGGCAUCGGGCc-GCA- -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 54522 | 0.68 | 0.838903 |
Target: 5'- -gGAUCugCacggcGCCGcuggGGCCCGGCGg -3' miRNA: 3'- uaUUAGugGca---CGGCa---UCGGGCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 138676 | 0.68 | 0.838903 |
Target: 5'- gGUGAgccUCACCGgcgacaagGCCGUgAGCCUgGGCGg -3' miRNA: 3'- -UAUU---AGUGGCa-------CGGCA-UCGGG-CCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 165772 | 0.68 | 0.838903 |
Target: 5'- --cAUCAUCGUGCCGaaggccAGCCCgcuGGCGc -3' miRNA: 3'- uauUAGUGGCACGGCa-----UCGGG---CCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 154690 | 0.68 | 0.838106 |
Target: 5'- --uGUCACCGUGCCcuucAGCaucgagaaguacgCCGGCGUc -3' miRNA: 3'- uauUAGUGGCACGGca--UCG-------------GGCCGCA- -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 167703 | 0.68 | 0.830855 |
Target: 5'- ----cCGCCGUGCagcaccucCGUGGCCaCGGUGg -3' miRNA: 3'- uauuaGUGGCACG--------GCAUCGG-GCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 42785 | 0.69 | 0.822635 |
Target: 5'- ----gCACC-UGcCCGUgcAGCCCGGCGg -3' miRNA: 3'- uauuaGUGGcAC-GGCA--UCGGGCCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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