miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 5' -57 NC_003521.1 + 187126 0.67 0.908667
Target:  5'- cGUGAUCG-CGUaCCGUGuauaacuaacauGCCCGGCGg -3'
miRNA:   3'- -UAUUAGUgGCAcGGCAU------------CGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 163554 0.67 0.908667
Target:  5'- ----cCACCcUGCUGguGCCCGGCGg -3'
miRNA:   3'- uauuaGUGGcACGGCauCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 164824 0.67 0.908667
Target:  5'- -gAGUCuucuaCGUGCugaCGgcGCCCGGCGa -3'
miRNA:   3'- uaUUAGug---GCACG---GCauCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 100970 0.67 0.90264
Target:  5'- ----gCGCCGUGcCCGgcGCgCaCGGCGUu -3'
miRNA:   3'- uauuaGUGGCAC-GGCauCG-G-GCCGCA- -5'
14628 5' -57 NC_003521.1 + 233840 0.67 0.90264
Target:  5'- ----cCGCCGUGUCGUGcGUCUGcGCGUc -3'
miRNA:   3'- uauuaGUGGCACGGCAU-CGGGC-CGCA- -5'
14628 5' -57 NC_003521.1 + 206235 0.67 0.90264
Target:  5'- --cAUCugCGcgcGCCuGcAGCCCGGCGUc -3'
miRNA:   3'- uauUAGugGCa--CGG-CaUCGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 234430 0.67 0.896391
Target:  5'- --cGUCGCCGccGCgGUAGCUgCGGCGc -3'
miRNA:   3'- uauUAGUGGCa-CGgCAUCGG-GCCGCa -5'
14628 5' -57 NC_003521.1 + 99083 0.67 0.896391
Target:  5'- ---uUCAgCGUGauG-AGCCCGGCGUc -3'
miRNA:   3'- uauuAGUgGCACggCaUCGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 89819 0.67 0.896391
Target:  5'- ---uUCGCCGUGUCG--GCCgaCGGCGUu -3'
miRNA:   3'- uauuAGUGGCACGGCauCGG--GCCGCA- -5'
14628 5' -57 NC_003521.1 + 113265 0.67 0.889925
Target:  5'- cUGAUCGCCGaGCaCcUGGCCgaCGGCGUg -3'
miRNA:   3'- uAUUAGUGGCaCG-GcAUCGG--GCCGCA- -5'
14628 5' -57 NC_003521.1 + 204831 0.67 0.889925
Target:  5'- --cGUCGCCGUcGCUGaccaAGCCCGGUu- -3'
miRNA:   3'- uauUAGUGGCA-CGGCa---UCGGGCCGca -5'
14628 5' -57 NC_003521.1 + 172283 0.67 0.889925
Target:  5'- gAUAGUUggcgGCCGcUGCCGccGUCCGGUGUc -3'
miRNA:   3'- -UAUUAG----UGGC-ACGGCauCGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 122597 0.67 0.889925
Target:  5'- -cGGUCGCCGgcguuUGCUGUuguuccugcgucGGCUCGGCGc -3'
miRNA:   3'- uaUUAGUGGC-----ACGGCA------------UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 128317 0.67 0.889925
Target:  5'- ----cCACCGUGgUGUAGCCgCGGUc- -3'
miRNA:   3'- uauuaGUGGCACgGCAUCGG-GCCGca -5'
14628 5' -57 NC_003521.1 + 104128 0.67 0.889267
Target:  5'- --cAUCGCCGUGgggacaCGauggagcUGGCCCGGCGc -3'
miRNA:   3'- uauUAGUGGCACg-----GC-------AUCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 17501 0.67 0.883245
Target:  5'- ----cCGCCGgucacgGCgGUucccGGCCCGGCGg -3'
miRNA:   3'- uauuaGUGGCa-----CGgCA----UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 138796 0.67 0.883245
Target:  5'- ----gCugCGcGCCGUGGCCCaGGUGc -3'
miRNA:   3'- uauuaGugGCaCGGCAUCGGG-CCGCa -5'
14628 5' -57 NC_003521.1 + 62224 0.67 0.882565
Target:  5'- ----aCGCCGUGCUgcaggagGgcGCCCGGCu- -3'
miRNA:   3'- uauuaGUGGCACGG-------CauCGGGCCGca -5'
14628 5' -57 NC_003521.1 + 154472 0.67 0.876353
Target:  5'- uUGGUCACCGgcaccGCCGgcGCC-GGCa- -3'
miRNA:   3'- uAUUAGUGGCa----CGGCauCGGgCCGca -5'
14628 5' -57 NC_003521.1 + 137240 0.67 0.876353
Target:  5'- -cGcgCACCG-GCCGgGGCCgaCGGCGg -3'
miRNA:   3'- uaUuaGUGGCaCGGCaUCGG--GCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.