miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 5' -57 NC_003521.1 + 54522 0.68 0.838903
Target:  5'- -gGAUCugCacggcGCCGcuggGGCCCGGCGg -3'
miRNA:   3'- uaUUAGugGca---CGGCa---UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 61771 0.72 0.634528
Target:  5'- --cGUCACCGggaccGCCGccGGCuCCGGCGUg -3'
miRNA:   3'- uauUAGUGGCa----CGGCa-UCG-GGCCGCA- -5'
14628 5' -57 NC_003521.1 + 62224 0.67 0.882565
Target:  5'- ----aCGCCGUGCUgcaggagGgcGCCCGGCu- -3'
miRNA:   3'- uauuaGUGGCACGG-------CauCGGGCCGca -5'
14628 5' -57 NC_003521.1 + 72631 0.66 0.925404
Target:  5'- --cAUCACCGUGCUGgcgGGCCa-GCa- -3'
miRNA:   3'- uauUAGUGGCACGGCa--UCGGgcCGca -5'
14628 5' -57 NC_003521.1 + 80383 0.69 0.822635
Target:  5'- -----uGCCGUGCCGUcgcGCCuuCGGCGUu -3'
miRNA:   3'- uauuagUGGCACGGCAu--CGG--GCCGCA- -5'
14628 5' -57 NC_003521.1 + 87269 0.67 0.876353
Target:  5'- ----gCGCCGUGCgCGUGGCCaacgGGCc- -3'
miRNA:   3'- uauuaGUGGCACG-GCAUCGGg---CCGca -5'
14628 5' -57 NC_003521.1 + 87601 0.66 0.935433
Target:  5'- -cGAagGCCGUGuuGUAGCa-GGUGUg -3'
miRNA:   3'- uaUUagUGGCACggCAUCGggCCGCA- -5'
14628 5' -57 NC_003521.1 + 89819 0.67 0.896391
Target:  5'- ---uUCGCCGUGUCG--GCCgaCGGCGUu -3'
miRNA:   3'- uauuAGUGGCACGGCauCGG--GCCGCA- -5'
14628 5' -57 NC_003521.1 + 94181 0.66 0.914471
Target:  5'- ---cUCGCCGUcGUCGUGGCCgGGg-- -3'
miRNA:   3'- uauuAGUGGCA-CGGCAUCGGgCCgca -5'
14628 5' -57 NC_003521.1 + 95782 0.69 0.800516
Target:  5'- -cGGUCAUCGUGCCGcucGGCCacgcgaccagcgcguCGGCGa -3'
miRNA:   3'- uaUUAGUGGCACGGCa--UCGG---------------GCCGCa -5'
14628 5' -57 NC_003521.1 + 96550 0.68 0.838903
Target:  5'- -gAGUCGCCGUGCUc--GCCCagcagacaGGCGUg -3'
miRNA:   3'- uaUUAGUGGCACGGcauCGGG--------CCGCA- -5'
14628 5' -57 NC_003521.1 + 96772 0.67 0.876353
Target:  5'- -cGGUCGCCGUcGCCGccGGCagcagCGGCGg -3'
miRNA:   3'- uaUUAGUGGCA-CGGCa-UCGg----GCCGCa -5'
14628 5' -57 NC_003521.1 + 99083 0.67 0.896391
Target:  5'- ---uUCAgCGUGauG-AGCCCGGCGUc -3'
miRNA:   3'- uauuAGUgGCACggCaUCGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 100212 0.66 0.935433
Target:  5'- ----cCGCUGcagGUCGUAGgCCGGCGa -3'
miRNA:   3'- uauuaGUGGCa--CGGCAUCgGGCCGCa -5'
14628 5' -57 NC_003521.1 + 100970 0.67 0.90264
Target:  5'- ----gCGCCGUGcCCGgcGCgCaCGGCGUu -3'
miRNA:   3'- uauuaGUGGCAC-GGCauCG-G-GCCGCA- -5'
14628 5' -57 NC_003521.1 + 104128 0.67 0.889267
Target:  5'- --cAUCGCCGUGgggacaCGauggagcUGGCCCGGCGc -3'
miRNA:   3'- uauUAGUGGCACg-----GC-------AUCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 105581 0.66 0.925404
Target:  5'- ----cCGCCGUGUCGUcGCcgccgCCGGCGc -3'
miRNA:   3'- uauuaGUGGCACGGCAuCG-----GGCCGCa -5'
14628 5' -57 NC_003521.1 + 109735 0.66 0.930532
Target:  5'- ----cCGCCGU-CCGgAGCCCGcGCGa -3'
miRNA:   3'- uauuaGUGGCAcGGCaUCGGGC-CGCa -5'
14628 5' -57 NC_003521.1 + 113265 0.67 0.889925
Target:  5'- cUGAUCGCCGaGCaCcUGGCCgaCGGCGUg -3'
miRNA:   3'- uAUUAGUGGCaCG-GcAUCGG--GCCGCA- -5'
14628 5' -57 NC_003521.1 + 117273 0.66 0.935433
Target:  5'- ----cCGCCGUcgucgGCCGUGGUgCCGGCu- -3'
miRNA:   3'- uauuaGUGGCA-----CGGCAUCG-GGCCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.