miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 5' -57 NC_003521.1 + 117691 0.76 0.434566
Target:  5'- -gAcgCGCCGcUGCCGUacuucguacagcGGCCCGGCGa -3'
miRNA:   3'- uaUuaGUGGC-ACGGCA------------UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 122597 0.67 0.889925
Target:  5'- -cGGUCGCCGgcguuUGCUGUuguuccugcgucGGCUCGGCGc -3'
miRNA:   3'- uaUUAGUGGC-----ACGGCA------------UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 126058 0.66 0.930532
Target:  5'- gAUGGUCuCCGUguccagcaGCUGUGGCCgcgccacccccaCGGCGUg -3'
miRNA:   3'- -UAUUAGuGGCA--------CGGCAUCGG------------GCCGCA- -5'
14628 5' -57 NC_003521.1 + 128317 0.67 0.889925
Target:  5'- ----cCACCGUGgUGUAGCCgCGGUc- -3'
miRNA:   3'- uauuaGUGGCACgGCAUCGG-GCCGca -5'
14628 5' -57 NC_003521.1 + 129446 0.66 0.925404
Target:  5'- --cGUCcccuCCGUcGCCGcUAGuCCCGGCGc -3'
miRNA:   3'- uauUAGu---GGCA-CGGC-AUC-GGGCCGCa -5'
14628 5' -57 NC_003521.1 + 129622 0.72 0.634528
Target:  5'- -gAGUCGCCG-GCC---GCCCGGCGg -3'
miRNA:   3'- uaUUAGUGGCaCGGcauCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 130180 0.84 0.147673
Target:  5'- --cGUgACCGUGCCGgcGCCCGGCGa -3'
miRNA:   3'- uauUAgUGGCACGGCauCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 133748 0.68 0.869255
Target:  5'- -----uGCUG-GCCGgcaGGCCCGGCGa -3'
miRNA:   3'- uauuagUGGCaCGGCa--UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 136758 0.72 0.644483
Target:  5'- uAUAGUCACCaacGUGCUGgcGCagaCGGCGUc -3'
miRNA:   3'- -UAUUAGUGG---CACGGCauCGg--GCCGCA- -5'
14628 5' -57 NC_003521.1 + 137240 0.67 0.876353
Target:  5'- -cGcgCACCG-GCCGgGGCCgaCGGCGg -3'
miRNA:   3'- uaUuaGUGGCaCGGCaUCGG--GCCGCa -5'
14628 5' -57 NC_003521.1 + 138676 0.68 0.838903
Target:  5'- gGUGAgccUCACCGgcgacaagGCCGUgAGCCUgGGCGg -3'
miRNA:   3'- -UAUU---AGUGGCa-------CGGCA-UCGGG-CCGCa -5'
14628 5' -57 NC_003521.1 + 138796 0.67 0.883245
Target:  5'- ----gCugCGcGCCGUGGCCCaGGUGc -3'
miRNA:   3'- uauuaGugGCaCGGCAUCGGG-CCGCa -5'
14628 5' -57 NC_003521.1 + 146995 0.7 0.77923
Target:  5'- --cGUCACCuaGUGCCGU-GCCCGGa-- -3'
miRNA:   3'- uauUAGUGG--CACGGCAuCGGGCCgca -5'
14628 5' -57 NC_003521.1 + 147835 0.68 0.861956
Target:  5'- ----gCACgGUGCCGUgcAGCCgGGgGUg -3'
miRNA:   3'- uauuaGUGgCACGGCA--UCGGgCCgCA- -5'
14628 5' -57 NC_003521.1 + 148082 0.68 0.85446
Target:  5'- cUGGUUcaggACCGUGCUcUGGuCCCGGCGc -3'
miRNA:   3'- uAUUAG----UGGCACGGcAUC-GGGCCGCa -5'
14628 5' -57 NC_003521.1 + 150820 0.66 0.925404
Target:  5'- ---uUCGCU---UCGUAGCCCGGCGc -3'
miRNA:   3'- uauuAGUGGcacGGCAUCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 151805 0.7 0.77923
Target:  5'- ---cUCACC--GCCGUGGCgCCGGUGg -3'
miRNA:   3'- uauuAGUGGcaCGGCAUCG-GGCCGCa -5'
14628 5' -57 NC_003521.1 + 152806 0.71 0.713469
Target:  5'- -cGGUCACCGgcagGUgGUacAGCUCGGCGUc -3'
miRNA:   3'- uaUUAGUGGCa---CGgCA--UCGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 154472 0.67 0.876353
Target:  5'- uUGGUCACCGgcaccGCCGgcGCC-GGCa- -3'
miRNA:   3'- uAUUAGUGGCa----CGGCauCGGgCCGca -5'
14628 5' -57 NC_003521.1 + 154690 0.68 0.838106
Target:  5'- --uGUCACCGUGCCcuucAGCaucgagaaguacgCCGGCGUc -3'
miRNA:   3'- uauUAGUGGCACGGca--UCG-------------GGCCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.