miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 5' -57 NC_003521.1 + 204934 0.68 0.85446
Target:  5'- -------gCGUGCCGUGGCaCCGGCc- -3'
miRNA:   3'- uauuagugGCACGGCAUCG-GGCCGca -5'
14628 5' -57 NC_003521.1 + 148082 0.68 0.85446
Target:  5'- cUGGUUcaggACCGUGCUcUGGuCCCGGCGc -3'
miRNA:   3'- uAUUAG----UGGCACGGcAUC-GGGCCGCa -5'
14628 5' -57 NC_003521.1 + 217717 0.68 0.85446
Target:  5'- ----aCACUGUGCCGU--CCCGGCc- -3'
miRNA:   3'- uauuaGUGGCACGGCAucGGGCCGca -5'
14628 5' -57 NC_003521.1 + 28808 0.68 0.85446
Target:  5'- --cGUCACCGacgGCCaGUA-CCUGGCGUg -3'
miRNA:   3'- uauUAGUGGCa--CGG-CAUcGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 147835 0.68 0.861956
Target:  5'- ----gCACgGUGCCGUgcAGCCgGGgGUg -3'
miRNA:   3'- uauuaGUGgCACGGCA--UCGGgCCgCA- -5'
14628 5' -57 NC_003521.1 + 181229 0.68 0.867086
Target:  5'- -cGAUCGCCGUcguugaccacguagGCCacGUAGagaCCGGCGUu -3'
miRNA:   3'- uaUUAGUGGCA--------------CGG--CAUCg--GGCCGCA- -5'
14628 5' -57 NC_003521.1 + 16287 0.68 0.869255
Target:  5'- cUGggCGCCGUggguGCCuaccGGCCCGGCGg -3'
miRNA:   3'- uAUuaGUGGCA----CGGca--UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 133748 0.68 0.869255
Target:  5'- -----uGCUG-GCCGgcaGGCCCGGCGa -3'
miRNA:   3'- uauuagUGGCaCGGCa--UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 96772 0.67 0.876353
Target:  5'- -cGGUCGCCGUcGCCGccGGCagcagCGGCGg -3'
miRNA:   3'- uaUUAGUGGCA-CGGCa-UCGg----GCCGCa -5'
14628 5' -57 NC_003521.1 + 137240 0.67 0.876353
Target:  5'- -cGcgCACCG-GCCGgGGCCgaCGGCGg -3'
miRNA:   3'- uaUuaGUGGCaCGGCaUCGG--GCCGCa -5'
14628 5' -57 NC_003521.1 + 154472 0.67 0.876353
Target:  5'- uUGGUCACCGgcaccGCCGgcGCC-GGCa- -3'
miRNA:   3'- uAUUAGUGGCa----CGGCauCGGgCCGca -5'
14628 5' -57 NC_003521.1 + 87269 0.67 0.876353
Target:  5'- ----gCGCCGUGCgCGUGGCCaacgGGCc- -3'
miRNA:   3'- uauuaGUGGCACG-GCAUCGGg---CCGca -5'
14628 5' -57 NC_003521.1 + 62224 0.67 0.882565
Target:  5'- ----aCGCCGUGCUgcaggagGgcGCCCGGCu- -3'
miRNA:   3'- uauuaGUGGCACGG-------CauCGGGCCGca -5'
14628 5' -57 NC_003521.1 + 138796 0.67 0.883245
Target:  5'- ----gCugCGcGCCGUGGCCCaGGUGc -3'
miRNA:   3'- uauuaGugGCaCGGCAUCGGG-CCGCa -5'
14628 5' -57 NC_003521.1 + 17501 0.67 0.883245
Target:  5'- ----cCGCCGgucacgGCgGUucccGGCCCGGCGg -3'
miRNA:   3'- uauuaGUGGCa-----CGgCA----UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 104128 0.67 0.889267
Target:  5'- --cAUCGCCGUGgggacaCGauggagcUGGCCCGGCGc -3'
miRNA:   3'- uauUAGUGGCACg-----GC-------AUCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 128317 0.67 0.889925
Target:  5'- ----cCACCGUGgUGUAGCCgCGGUc- -3'
miRNA:   3'- uauuaGUGGCACgGCAUCGG-GCCGca -5'
14628 5' -57 NC_003521.1 + 122597 0.67 0.889925
Target:  5'- -cGGUCGCCGgcguuUGCUGUuguuccugcgucGGCUCGGCGc -3'
miRNA:   3'- uaUUAGUGGC-----ACGGCA------------UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 204831 0.67 0.889925
Target:  5'- --cGUCGCCGUcGCUGaccaAGCCCGGUu- -3'
miRNA:   3'- uauUAGUGGCA-CGGCa---UCGGGCCGca -5'
14628 5' -57 NC_003521.1 + 113265 0.67 0.889925
Target:  5'- cUGAUCGCCGaGCaCcUGGCCgaCGGCGUg -3'
miRNA:   3'- uAUUAGUGGCaCG-GcAUCGG--GCCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.