miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 5' -57 NC_003521.1 + 211073 0.7 0.742216
Target:  5'- ---cUCGCUcuGUcGCCGUuGCCCGGCGg -3'
miRNA:   3'- uauuAGUGG--CA-CGGCAuCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 180940 0.7 0.760939
Target:  5'- gGUGG-CGCgGUGCCGUAGUCC-GCGg -3'
miRNA:   3'- -UAUUaGUGgCACGGCAUCGGGcCGCa -5'
14628 5' -57 NC_003521.1 + 146995 0.7 0.77923
Target:  5'- --cGUCACCuaGUGCCGU-GCCCGGa-- -3'
miRNA:   3'- uauUAGUGG--CACGGCAuCGGGCCgca -5'
14628 5' -57 NC_003521.1 + 151805 0.7 0.77923
Target:  5'- ---cUCACC--GCCGUGGCgCCGGUGg -3'
miRNA:   3'- uauuAGUGGcaCGGCAUCG-GGCCGCa -5'
14628 5' -57 NC_003521.1 + 36759 0.69 0.797023
Target:  5'- ---cUCGCUGUccaaggacGCgCGUGGCCUGGCGg -3'
miRNA:   3'- uauuAGUGGCA--------CG-GCAUCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 95782 0.69 0.800516
Target:  5'- -cGGUCAUCGUGCCGcucGGCCacgcgaccagcgcguCGGCGa -3'
miRNA:   3'- uaUUAGUGGCACGGCa--UCGG---------------GCCGCa -5'
14628 5' -57 NC_003521.1 + 32903 0.69 0.814252
Target:  5'- ----cCGCCGUGCCcgccgccCCCGGCGUa -3'
miRNA:   3'- uauuaGUGGCACGGcauc---GGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 239520 0.69 0.814252
Target:  5'- ---cUCGCCGgcGCCGUAGCggaaccauucgUCGGCGUc -3'
miRNA:   3'- uauuAGUGGCa-CGGCAUCG-----------GGCCGCA- -5'
14628 5' -57 NC_003521.1 + 2610 0.69 0.822635
Target:  5'- ----aCGCCGUGCCGacGCCCaGGCu- -3'
miRNA:   3'- uauuaGUGGCACGGCauCGGG-CCGca -5'
14628 5' -57 NC_003521.1 + 42785 0.69 0.822635
Target:  5'- ----gCACC-UGcCCGUgcAGCCCGGCGg -3'
miRNA:   3'- uauuaGUGGcAC-GGCA--UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 80383 0.69 0.822635
Target:  5'- -----uGCCGUGCCGUcgcGCCuuCGGCGUu -3'
miRNA:   3'- uauuagUGGCACGGCAu--CGG--GCCGCA- -5'
14628 5' -57 NC_003521.1 + 167703 0.68 0.830855
Target:  5'- ----cCGCCGUGCagcaccucCGUGGCCaCGGUGg -3'
miRNA:   3'- uauuaGUGGCACG--------GCAUCGG-GCCGCa -5'
14628 5' -57 NC_003521.1 + 154690 0.68 0.838106
Target:  5'- --uGUCACCGUGCCcuucAGCaucgagaaguacgCCGGCGUc -3'
miRNA:   3'- uauUAGUGGCACGGca--UCG-------------GGCCGCA- -5'
14628 5' -57 NC_003521.1 + 220395 0.68 0.838903
Target:  5'- -gAAUCuCCGUGCCGUuuuuguacAGCCauGCGUc -3'
miRNA:   3'- uaUUAGuGGCACGGCA--------UCGGgcCGCA- -5'
14628 5' -57 NC_003521.1 + 165772 0.68 0.838903
Target:  5'- --cAUCAUCGUGCCGaaggccAGCCCgcuGGCGc -3'
miRNA:   3'- uauUAGUGGCACGGCa-----UCGGG---CCGCa -5'
14628 5' -57 NC_003521.1 + 138676 0.68 0.838903
Target:  5'- gGUGAgccUCACCGgcgacaagGCCGUgAGCCUgGGCGg -3'
miRNA:   3'- -UAUU---AGUGGCa-------CGGCA-UCGGG-CCGCa -5'
14628 5' -57 NC_003521.1 + 54522 0.68 0.838903
Target:  5'- -gGAUCugCacggcGCCGcuggGGCCCGGCGg -3'
miRNA:   3'- uaUUAGugGca---CGGCa---UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 96550 0.68 0.838903
Target:  5'- -gAGUCGCCGUGCUc--GCCCagcagacaGGCGUg -3'
miRNA:   3'- uaUUAGUGGCACGGcauCGGG--------CCGCA- -5'
14628 5' -57 NC_003521.1 + 33668 0.68 0.838903
Target:  5'- -gGAUCcagcgACCG-GCCGUGGCCCGcaCGUa -3'
miRNA:   3'- uaUUAG-----UGGCaCGGCAUCGGGCc-GCA- -5'
14628 5' -57 NC_003521.1 + 28808 0.68 0.85446
Target:  5'- --cGUCACCGacgGCCaGUA-CCUGGCGUg -3'
miRNA:   3'- uauUAGUGGCa--CGG-CAUcGGGCCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.