Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14628 | 5' | -57 | NC_003521.1 | + | 17501 | 0.67 | 0.883245 |
Target: 5'- ----cCGCCGgucacgGCgGUucccGGCCCGGCGg -3' miRNA: 3'- uauuaGUGGCa-----CGgCA----UCGGGCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 122597 | 0.67 | 0.889925 |
Target: 5'- -cGGUCGCCGgcguuUGCUGUuguuccugcgucGGCUCGGCGc -3' miRNA: 3'- uaUUAGUGGC-----ACGGCA------------UCGGGCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 89819 | 0.67 | 0.896391 |
Target: 5'- ---uUCGCCGUGUCG--GCCgaCGGCGUu -3' miRNA: 3'- uauuAGUGGCACGGCauCGG--GCCGCA- -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 100970 | 0.67 | 0.90264 |
Target: 5'- ----gCGCCGUGcCCGgcGCgCaCGGCGUu -3' miRNA: 3'- uauuaGUGGCAC-GGCauCG-G-GCCGCA- -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 233840 | 0.67 | 0.90264 |
Target: 5'- ----cCGCCGUGUCGUGcGUCUGcGCGUc -3' miRNA: 3'- uauuaGUGGCACGGCAU-CGGGC-CGCA- -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 104128 | 0.67 | 0.889267 |
Target: 5'- --cAUCGCCGUGgggacaCGauggagcUGGCCCGGCGc -3' miRNA: 3'- uauUAGUGGCACg-----GC-------AUCGGGCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 62224 | 0.67 | 0.882565 |
Target: 5'- ----aCGCCGUGCUgcaggagGgcGCCCGGCu- -3' miRNA: 3'- uauuaGUGGCACGG-------CauCGGGCCGca -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 154472 | 0.67 | 0.876353 |
Target: 5'- uUGGUCACCGgcaccGCCGgcGCC-GGCa- -3' miRNA: 3'- uAUUAGUGGCa----CGGCauCGGgCCGca -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 137240 | 0.67 | 0.876353 |
Target: 5'- -cGcgCACCG-GCCGgGGCCgaCGGCGg -3' miRNA: 3'- uaUuaGUGGCaCGGCaUCGG--GCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 204831 | 0.67 | 0.889925 |
Target: 5'- --cGUCGCCGUcGCUGaccaAGCCCGGUu- -3' miRNA: 3'- uauUAGUGGCA-CGGCa---UCGGGCCGca -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 164824 | 0.67 | 0.908667 |
Target: 5'- -gAGUCuucuaCGUGCugaCGgcGCCCGGCGa -3' miRNA: 3'- uaUUAGug---GCACG---GCauCGGGCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 87269 | 0.67 | 0.876353 |
Target: 5'- ----gCGCCGUGCgCGUGGCCaacgGGCc- -3' miRNA: 3'- uauuaGUGGCACG-GCAUCGGg---CCGca -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 138796 | 0.67 | 0.883245 |
Target: 5'- ----gCugCGcGCCGUGGCCCaGGUGc -3' miRNA: 3'- uauuaGugGCaCGGCAUCGGG-CCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 113265 | 0.67 | 0.889925 |
Target: 5'- cUGAUCGCCGaGCaCcUGGCCgaCGGCGUg -3' miRNA: 3'- uAUUAGUGGCaCG-GcAUCGG--GCCGCA- -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 172283 | 0.67 | 0.889925 |
Target: 5'- gAUAGUUggcgGCCGcUGCCGccGUCCGGUGUc -3' miRNA: 3'- -UAUUAG----UGGC-ACGGCauCGGGCCGCA- -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 99083 | 0.67 | 0.896391 |
Target: 5'- ---uUCAgCGUGauG-AGCCCGGCGUc -3' miRNA: 3'- uauuAGUgGCACggCaUCGGGCCGCA- -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 234430 | 0.67 | 0.896391 |
Target: 5'- --cGUCGCCGccGCgGUAGCUgCGGCGc -3' miRNA: 3'- uauUAGUGGCa-CGgCAUCGG-GCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 206235 | 0.67 | 0.90264 |
Target: 5'- --cAUCugCGcgcGCCuGcAGCCCGGCGUc -3' miRNA: 3'- uauUAGugGCa--CGG-CaUCGGGCCGCA- -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 163554 | 0.67 | 0.908667 |
Target: 5'- ----cCACCcUGCUGguGCCCGGCGg -3' miRNA: 3'- uauuaGUGGcACGGCauCGGGCCGCa -5' |
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14628 | 5' | -57 | NC_003521.1 | + | 96772 | 0.67 | 0.876353 |
Target: 5'- -cGGUCGCCGUcGCCGccGGCagcagCGGCGg -3' miRNA: 3'- uaUUAGUGGCA-CGGCa-UCGg----GCCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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