miRNA display CGI


Results 21 - 40 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 5' -57 NC_003521.1 + 187126 0.67 0.908667
Target:  5'- cGUGAUCG-CGUaCCGUGuauaacuaacauGCCCGGCGg -3'
miRNA:   3'- -UAUUAGUgGCAcGGCAU------------CGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 181229 0.68 0.867086
Target:  5'- -cGAUCGCCGUcguugaccacguagGCCacGUAGagaCCGGCGUu -3'
miRNA:   3'- uaUUAGUGGCA--------------CGG--CAUCg--GGCCGCA- -5'
14628 5' -57 NC_003521.1 + 180940 0.7 0.760939
Target:  5'- gGUGG-CGCgGUGCCGUAGUCC-GCGg -3'
miRNA:   3'- -UAUUaGUGgCACGGCAUCGGGcCGCa -5'
14628 5' -57 NC_003521.1 + 176061 0.72 0.628554
Target:  5'- -gGAUCGCCcgGUGCCGcgccggccggcgucuUGGCCaCGGCGUc -3'
miRNA:   3'- uaUUAGUGG--CACGGC---------------AUCGG-GCCGCA- -5'
14628 5' -57 NC_003521.1 + 172283 0.67 0.889925
Target:  5'- gAUAGUUggcgGCCGcUGCCGccGUCCGGUGUc -3'
miRNA:   3'- -UAUUAG----UGGC-ACGGCauCGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 167703 0.68 0.830855
Target:  5'- ----cCGCCGUGCagcaccucCGUGGCCaCGGUGg -3'
miRNA:   3'- uauuaGUGGCACG--------GCAUCGG-GCCGCa -5'
14628 5' -57 NC_003521.1 + 166462 0.66 0.935433
Target:  5'- --cGUCGCCGcacugGCCGUAGCCgCGcagcaGCGc -3'
miRNA:   3'- uauUAGUGGCa----CGGCAUCGG-GC-----CGCa -5'
14628 5' -57 NC_003521.1 + 165772 0.68 0.838903
Target:  5'- --cAUCAUCGUGCCGaaggccAGCCCgcuGGCGc -3'
miRNA:   3'- uauUAGUGGCACGGCa-----UCGGG---CCGCa -5'
14628 5' -57 NC_003521.1 + 164824 0.67 0.908667
Target:  5'- -gAGUCuucuaCGUGCugaCGgcGCCCGGCGa -3'
miRNA:   3'- uaUUAGug---GCACG---GCauCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 163554 0.67 0.908667
Target:  5'- ----cCACCcUGCUGguGCCCGGCGg -3'
miRNA:   3'- uauuaGUGGcACGGCauCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 154690 0.68 0.838106
Target:  5'- --uGUCACCGUGCCcuucAGCaucgagaaguacgCCGGCGUc -3'
miRNA:   3'- uauUAGUGGCACGGca--UCG-------------GGCCGCA- -5'
14628 5' -57 NC_003521.1 + 154472 0.67 0.876353
Target:  5'- uUGGUCACCGgcaccGCCGgcGCC-GGCa- -3'
miRNA:   3'- uAUUAGUGGCa----CGGCauCGGgCCGca -5'
14628 5' -57 NC_003521.1 + 152806 0.71 0.713469
Target:  5'- -cGGUCACCGgcagGUgGUacAGCUCGGCGUc -3'
miRNA:   3'- uaUUAGUGGCa---CGgCA--UCGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 151805 0.7 0.77923
Target:  5'- ---cUCACC--GCCGUGGCgCCGGUGg -3'
miRNA:   3'- uauuAGUGGcaCGGCAUCG-GGCCGCa -5'
14628 5' -57 NC_003521.1 + 150820 0.66 0.925404
Target:  5'- ---uUCGCU---UCGUAGCCCGGCGc -3'
miRNA:   3'- uauuAGUGGcacGGCAUCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 148082 0.68 0.85446
Target:  5'- cUGGUUcaggACCGUGCUcUGGuCCCGGCGc -3'
miRNA:   3'- uAUUAG----UGGCACGGcAUC-GGGCCGCa -5'
14628 5' -57 NC_003521.1 + 147835 0.68 0.861956
Target:  5'- ----gCACgGUGCCGUgcAGCCgGGgGUg -3'
miRNA:   3'- uauuaGUGgCACGGCA--UCGGgCCgCA- -5'
14628 5' -57 NC_003521.1 + 146995 0.7 0.77923
Target:  5'- --cGUCACCuaGUGCCGU-GCCCGGa-- -3'
miRNA:   3'- uauUAGUGG--CACGGCAuCGGGCCgca -5'
14628 5' -57 NC_003521.1 + 138796 0.67 0.883245
Target:  5'- ----gCugCGcGCCGUGGCCCaGGUGc -3'
miRNA:   3'- uauuaGugGCaCGGCAUCGGG-CCGCa -5'
14628 5' -57 NC_003521.1 + 138676 0.68 0.838903
Target:  5'- gGUGAgccUCACCGgcgacaagGCCGUgAGCCUgGGCGg -3'
miRNA:   3'- -UAUU---AGUGGCa-------CGGCA-UCGGG-CCGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.