miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 5' -57 NC_003521.1 + 239520 0.69 0.814252
Target:  5'- ---cUCGCCGgcGCCGUAGCggaaccauucgUCGGCGUc -3'
miRNA:   3'- uauuAGUGGCa-CGGCAUCG-----------GGCCGCA- -5'
14628 5' -57 NC_003521.1 + 239048 0.66 0.933986
Target:  5'- cUGGUCGCgGcGCCGUguuccgaggaagagAGCCUGGCu- -3'
miRNA:   3'- uAUUAGUGgCaCGGCA--------------UCGGGCCGca -5'
14628 5' -57 NC_003521.1 + 236304 0.66 0.929524
Target:  5'- cGUGAUCGCCGUuuuuCCGcuuacucaucggGGCCCGGaCGg -3'
miRNA:   3'- -UAUUAGUGGCAc---GGCa-----------UCGGGCC-GCa -5'
14628 5' -57 NC_003521.1 + 234430 0.67 0.896391
Target:  5'- --cGUCGCCGccGCgGUAGCUgCGGCGc -3'
miRNA:   3'- uauUAGUGGCa-CGgCAUCGG-GCCGCa -5'
14628 5' -57 NC_003521.1 + 233840 0.67 0.90264
Target:  5'- ----cCGCCGUGUCGUGcGUCUGcGCGUc -3'
miRNA:   3'- uauuaGUGGCACGGCAU-CGGGC-CGCA- -5'
14628 5' -57 NC_003521.1 + 226228 1.06 0.005708
Target:  5'- cAUAAUCACCGUGCCGUAGCCCGGCGUg -3'
miRNA:   3'- -UAUUAGUGGCACGGCAUCGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 220395 0.68 0.838903
Target:  5'- -gAAUCuCCGUGCCGUuuuuguacAGCCauGCGUc -3'
miRNA:   3'- uaUUAGuGGCACGGCA--------UCGGgcCGCA- -5'
14628 5' -57 NC_003521.1 + 218315 0.66 0.930532
Target:  5'- ---cUCACCGcagaaacCCGUGGCCaCGGUGg -3'
miRNA:   3'- uauuAGUGGCac-----GGCAUCGG-GCCGCa -5'
14628 5' -57 NC_003521.1 + 217717 0.68 0.85446
Target:  5'- ----aCACUGUGCCGU--CCCGGCc- -3'
miRNA:   3'- uauuaGUGGCACGGCAucGGGCCGca -5'
14628 5' -57 NC_003521.1 + 217513 0.66 0.914471
Target:  5'- cAUGGcCACgGUGCUGUAGaCCC-GCGUg -3'
miRNA:   3'- -UAUUaGUGgCACGGCAUC-GGGcCGCA- -5'
14628 5' -57 NC_003521.1 + 212850 0.71 0.674261
Target:  5'- ----cCGCCGUgGCCGUGagcgccGCCUGGCGUu -3'
miRNA:   3'- uauuaGUGGCA-CGGCAU------CGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 211073 0.7 0.742216
Target:  5'- ---cUCGCUcuGUcGCCGUuGCCCGGCGg -3'
miRNA:   3'- uauuAGUGG--CA-CGGCAuCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 209529 0.73 0.575009
Target:  5'- --cGUCGCCGcUGCCGcgguuaugcGCCCGGCGg -3'
miRNA:   3'- uauUAGUGGC-ACGGCau-------CGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 208932 0.74 0.555408
Target:  5'- -cAGUUcCUGUGCCGcGGCCUGGCGg -3'
miRNA:   3'- uaUUAGuGGCACGGCaUCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 206235 0.67 0.90264
Target:  5'- --cAUCugCGcgcGCCuGcAGCCCGGCGUc -3'
miRNA:   3'- uauUAGugGCa--CGG-CaUCGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 204934 0.68 0.85446
Target:  5'- -------gCGUGCCGUGGCaCCGGCc- -3'
miRNA:   3'- uauuagugGCACGGCAUCG-GGCCGca -5'
14628 5' -57 NC_003521.1 + 204831 0.67 0.889925
Target:  5'- --cGUCGCCGUcGCUGaccaAGCCCGGUu- -3'
miRNA:   3'- uauUAGUGGCA-CGGCa---UCGGGCCGca -5'
14628 5' -57 NC_003521.1 + 195008 0.66 0.920051
Target:  5'- ---uUCGCCGUGCCaGUGGCCUucGCc- -3'
miRNA:   3'- uauuAGUGGCACGG-CAUCGGGc-CGca -5'
14628 5' -57 NC_003521.1 + 193661 0.72 0.654428
Target:  5'- -aGAUCAUCGUGCuCGUcggcaAGCgCGGCGg -3'
miRNA:   3'- uaUUAGUGGCACG-GCA-----UCGgGCCGCa -5'
14628 5' -57 NC_003521.1 + 192810 0.73 0.594763
Target:  5'- -gGAUCGCUGgcagcaGCCGcagaAGCCCGGCGg -3'
miRNA:   3'- uaUUAGUGGCa-----CGGCa---UCGGGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.