miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 5' -57 NC_003521.1 + 2610 0.69 0.822635
Target:  5'- ----aCGCCGUGCCGacGCCCaGGCu- -3'
miRNA:   3'- uauuaGUGGCACGGCauCGGG-CCGca -5'
14628 5' -57 NC_003521.1 + 13879 0.66 0.920051
Target:  5'- ----gCGCCGccauggauuucGCCGgggGGCCCGGCGc -3'
miRNA:   3'- uauuaGUGGCa----------CGGCa--UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 16287 0.68 0.869255
Target:  5'- cUGggCGCCGUggguGCCuaccGGCCCGGCGg -3'
miRNA:   3'- uAUuaGUGGCA----CGGca--UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 17501 0.67 0.883245
Target:  5'- ----cCGCCGgucacgGCgGUucccGGCCCGGCGg -3'
miRNA:   3'- uauuaGUGGCa-----CGgCA----UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 18073 0.75 0.49797
Target:  5'- ----aCGCCGUGgCCGUAGCCCagacGGCGc -3'
miRNA:   3'- uauuaGUGGCAC-GGCAUCGGG----CCGCa -5'
14628 5' -57 NC_003521.1 + 23087 0.73 0.594763
Target:  5'- --uGUCugCGU-CCGUGGCCgGGCGg -3'
miRNA:   3'- uauUAGugGCAcGGCAUCGGgCCGCa -5'
14628 5' -57 NC_003521.1 + 23619 0.66 0.920051
Target:  5'- -cGAUCugCaccGCCGUGGCCUgccugGGCGg -3'
miRNA:   3'- uaUUAGugGca-CGGCAUCGGG-----CCGCa -5'
14628 5' -57 NC_003521.1 + 26009 0.71 0.693963
Target:  5'- ----cCGCCGUcGCCGc-GCCCGGCGc -3'
miRNA:   3'- uauuaGUGGCA-CGGCauCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 28808 0.68 0.85446
Target:  5'- --cGUCACCGacgGCCaGUA-CCUGGCGUg -3'
miRNA:   3'- uauUAGUGGCa--CGG-CAUcGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 30937 0.77 0.392252
Target:  5'- -cAGUCGCCGUGCCGUagguagugccaAGCCaGGCGc -3'
miRNA:   3'- uaUUAGUGGCACGGCA-----------UCGGgCCGCa -5'
14628 5' -57 NC_003521.1 + 32903 0.69 0.814252
Target:  5'- ----cCGCCGUGCCcgccgccCCCGGCGUa -3'
miRNA:   3'- uauuaGUGGCACGGcauc---GGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 33668 0.68 0.838903
Target:  5'- -gGAUCcagcgACCG-GCCGUGGCCCGcaCGUa -3'
miRNA:   3'- uaUUAG-----UGGCaCGGCAUCGGGCc-GCA- -5'
14628 5' -57 NC_003521.1 + 36759 0.69 0.797023
Target:  5'- ---cUCGCUGUccaaggacGCgCGUGGCCUGGCGg -3'
miRNA:   3'- uauuAGUGGCA--------CG-GCAUCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 38821 0.66 0.933986
Target:  5'- cUGGUCGCgGcGCCGUguuccgaggaagagAGCCUGGCu- -3'
miRNA:   3'- uAUUAGUGgCaCGGCA--------------UCGGGCCGca -5'
14628 5' -57 NC_003521.1 + 39292 0.71 0.713469
Target:  5'- --cGUCGCCGgcGCCGUAGCggaaccauucgUCGGCGUc -3'
miRNA:   3'- uauUAGUGGCa-CGGCAUCG-----------GGCCGCA- -5'
14628 5' -57 NC_003521.1 + 39436 0.73 0.575009
Target:  5'- -----uGCCGcUGCCGgccgAGCCCGGCGc -3'
miRNA:   3'- uauuagUGGC-ACGGCa---UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 42785 0.69 0.822635
Target:  5'- ----gCACC-UGcCCGUgcAGCCCGGCGg -3'
miRNA:   3'- uauuaGUGGcAC-GGCA--UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 43486 0.66 0.925404
Target:  5'- -----gGCCGUGCU--GGCCgCGGCGg -3'
miRNA:   3'- uauuagUGGCACGGcaUCGG-GCCGCa -5'
14628 5' -57 NC_003521.1 + 44244 0.74 0.516849
Target:  5'- ----cCGCCGUGCgCGggAGUCCGGCGUc -3'
miRNA:   3'- uauuaGUGGCACG-GCa-UCGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 54494 0.68 0.85446
Target:  5'- uUGAUgGCCG-GC---GGCCCGGCGUg -3'
miRNA:   3'- uAUUAgUGGCaCGgcaUCGGGCCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.