miRNA display CGI


Results 61 - 80 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 3' -56.7 NC_003521.1 + 70100 0.68 0.88407
Target:  5'- aGGGcACCuGGCC-GGCGUgccgccgaaGGGCCGCu -3'
miRNA:   3'- -CUCuUGG-CCGGaUCGCAag-------CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 192654 0.68 0.88407
Target:  5'- cGGGAACuCGGgCUugGGCGUcUUGGGCuCGCc -3'
miRNA:   3'- -CUCUUG-GCCgGA--UCGCA-AGCCUG-GCG- -5'
14629 3' -56.7 NC_003521.1 + 91817 0.68 0.88407
Target:  5'- uGGggUCGGUCUggaucuggacgGGCGUgaaGGugCGCg -3'
miRNA:   3'- cUCuuGGCCGGA-----------UCGCAag-CCugGCG- -5'
14629 3' -56.7 NC_003521.1 + 124181 0.68 0.871019
Target:  5'- cGAGAgGCCGGCgUAGCugccgcugagGaacuccaccaccuugUCGGGCCGCa -3'
miRNA:   3'- -CUCU-UGGCCGgAUCG----------Ca--------------AGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 198271 0.68 0.870312
Target:  5'- cGGAcaGCCaGCCgGGCGUcgcggaGGACCGCu -3'
miRNA:   3'- cUCU--UGGcCGGaUCGCAag----CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 154110 0.68 0.870312
Target:  5'- aAGAACCGGCCcaucucGCGgcCGGGCaaggGCg -3'
miRNA:   3'- cUCUUGGCCGGau----CGCaaGCCUGg---CG- -5'
14629 3' -56.7 NC_003521.1 + 148439 0.69 0.863135
Target:  5'- aGGAGCCGGCggAGCGacggcagCGGGCgaGCg -3'
miRNA:   3'- cUCUUGGCCGgaUCGCaa-----GCCUGg-CG- -5'
14629 3' -56.7 NC_003521.1 + 121099 0.69 0.855765
Target:  5'- cGGAACUGGUCggugaagguggGGUGUUCgcuguacuggGGGCCGCg -3'
miRNA:   3'- cUCUUGGCCGGa----------UCGCAAG----------CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 17758 0.69 0.855765
Target:  5'- gGGGAACUGGCCguaccgccGGCGg-CGGACgGUc -3'
miRNA:   3'- -CUCUUGGCCGGa-------UCGCaaGCCUGgCG- -5'
14629 3' -56.7 NC_003521.1 + 37483 0.69 0.855018
Target:  5'- -uGGACgCGGUCUgccccccGGCGUuuUCGGGcCCGCg -3'
miRNA:   3'- cuCUUG-GCCGGA-------UCGCA--AGCCU-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 13729 0.69 0.84821
Target:  5'- uGGGAACC-GCUcAGUGgcUCGGACCGUc -3'
miRNA:   3'- -CUCUUGGcCGGaUCGCa-AGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 138380 0.69 0.84821
Target:  5'- cGAGAucuGCCgcGGCCUGcggcGCGUcUGGAUCGCc -3'
miRNA:   3'- -CUCU---UGG--CCGGAU----CGCAaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 117491 0.69 0.84821
Target:  5'- cGGcGCUggGGCCgucGGUGUUCGGACgGCu -3'
miRNA:   3'- cUCuUGG--CCGGa--UCGCAAGCCUGgCG- -5'
14629 3' -56.7 NC_003521.1 + 137865 0.69 0.840473
Target:  5'- cAGAGCCccgacGCCcgAGCGccUGGACCGCg -3'
miRNA:   3'- cUCUUGGc----CGGa-UCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 63535 0.69 0.840473
Target:  5'- -cGAGCCcugGGCCcAGCGUcaCGGAgCCGCc -3'
miRNA:   3'- cuCUUGG---CCGGaUCGCAa-GCCU-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 193177 0.69 0.832561
Target:  5'- aGGAGCCGGCgggAGCGg-CGGAgCGUg -3'
miRNA:   3'- cUCUUGGCCGga-UCGCaaGCCUgGCG- -5'
14629 3' -56.7 NC_003521.1 + 169994 0.69 0.832561
Target:  5'- gGGGGACgcuuuccaugaGGCCUugcuGCGccucUUCGGGCCGCu -3'
miRNA:   3'- -CUCUUGg----------CCGGAu---CGC----AAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 166615 0.69 0.832561
Target:  5'- cAGGACgUGGCagaagacGGCG-UCGGGCCGCg -3'
miRNA:   3'- cUCUUG-GCCGga-----UCGCaAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 150884 0.69 0.832561
Target:  5'- cGAGGugCGGCCgcacgccGGCGUcaUCG-ACUGCg -3'
miRNA:   3'- -CUCUugGCCGGa------UCGCA--AGCcUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 4573 0.69 0.832561
Target:  5'- cGGGGcacacGCCGGCCUccGGUuugcuaaCGGGCCGCg -3'
miRNA:   3'- -CUCU-----UGGCCGGA--UCGcaa----GCCUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.