miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 3' -56.7 NC_003521.1 + 166243 0.67 0.920302
Target:  5'- -uGAugCcGCCcGGCGagCGGGCCGUg -3'
miRNA:   3'- cuCUugGcCGGaUCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 118669 0.67 0.920302
Target:  5'- cGGggUCGGCUUcgggaGGCGg-CGGuACCGCu -3'
miRNA:   3'- cUCuuGGCCGGA-----UCGCaaGCC-UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 108323 0.67 0.920302
Target:  5'- gGAGGAUUGGUCUGcacGgGUcUCuGGGCCGCa -3'
miRNA:   3'- -CUCUUGGCCGGAU---CgCA-AG-CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 156128 0.67 0.920302
Target:  5'- gGAG-GCCGGCCUGGa----GGugUGCa -3'
miRNA:   3'- -CUCuUGGCCGGAUCgcaagCCugGCG- -5'
14629 3' -56.7 NC_003521.1 + 238859 0.67 0.914804
Target:  5'- aGAGGcgcGCCGGCUgGGUGUcccgCGGGuCCGUu -3'
miRNA:   3'- -CUCU---UGGCCGGaUCGCAa---GCCU-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 38632 0.67 0.914804
Target:  5'- aGAGGcgcGCCGGCUgGGUGUcccgCGGGuCCGUu -3'
miRNA:   3'- -CUCU---UGGCCGGaUCGCAa---GCCU-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 18728 0.67 0.914804
Target:  5'- cGAGAcgcuGCCGGCgCU-GCaGggCGGGCUGUg -3'
miRNA:   3'- -CUCU----UGGCCG-GAuCG-CaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 159822 0.67 0.914804
Target:  5'- -cGGACCGGCCgugaGGCGcugcgCGGAggCGCg -3'
miRNA:   3'- cuCUUGGCCGGa---UCGCaa---GCCUg-GCG- -5'
14629 3' -56.7 NC_003521.1 + 133363 0.67 0.914804
Target:  5'- gGAGAucagcacgguccGCCGGCacAGCGcggCGGuCCGCg -3'
miRNA:   3'- -CUCU------------UGGCCGgaUCGCaa-GCCuGGCG- -5'
14629 3' -56.7 NC_003521.1 + 101271 0.67 0.914804
Target:  5'- aGAG-GCUGGCCcagagcgcgUAGCuGUgcUCGGugCGCa -3'
miRNA:   3'- -CUCuUGGCCGG---------AUCG-CA--AGCCugGCG- -5'
14629 3' -56.7 NC_003521.1 + 118201 0.67 0.914804
Target:  5'- cGGGGCC-GCCgAGCGcgCGGccGCCGCc -3'
miRNA:   3'- cUCUUGGcCGGaUCGCaaGCC--UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 88276 0.67 0.914243
Target:  5'- cGAGuGCUGGCugucgugcacgaaCUGGCGca-GGGCCGCc -3'
miRNA:   3'- -CUCuUGGCCG-------------GAUCGCaagCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 133172 0.67 0.909088
Target:  5'- cGGGACaccagcaguggCGGCCUcGGCGaUCGGgacgACCGCg -3'
miRNA:   3'- cUCUUG-----------GCCGGA-UCGCaAGCC----UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 77566 0.67 0.909088
Target:  5'- cGAG-ACCGGCgUcaaGGCGUUgaaGACCGCc -3'
miRNA:   3'- -CUCuUGGCCGgA---UCGCAAgc-CUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 116336 0.68 0.897004
Target:  5'- aAGAGCU-GCUgacGCGgaCGGACCGCg -3'
miRNA:   3'- cUCUUGGcCGGau-CGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 213290 0.68 0.897004
Target:  5'- gGAG-ACCGucuacGCCaccgugGGCGccUCGGGCCGCa -3'
miRNA:   3'- -CUCuUGGC-----CGGa-----UCGCa-AGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 19958 0.68 0.890641
Target:  5'- uGAGGugGCCGGgCUGGCGgugaUCGuGACCu- -3'
miRNA:   3'- -CUCU--UGGCCgGAUCGCa---AGC-CUGGcg -5'
14629 3' -56.7 NC_003521.1 + 107427 0.68 0.890641
Target:  5'- uGAGAGCCGacGCgaaAGCG--CGGACCGCc -3'
miRNA:   3'- -CUCUUGGC--CGga-UCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 89120 0.68 0.890641
Target:  5'- cGAGGACCacgucuucaGCCUgaAGCugaCGGACCGCa -3'
miRNA:   3'- -CUCUUGGc--------CGGA--UCGcaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 150335 0.68 0.890641
Target:  5'- cGGGACacggccccgucuCGGCCgaggucuGCGUgCGGACCGUg -3'
miRNA:   3'- cUCUUG------------GCCGGau-----CGCAaGCCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.