miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 3' -56.7 NC_003521.1 + 89222 0.67 0.935472
Target:  5'- gGGGAcACCGGCCgaccuccAGCG--CGGAgaCCGCu -3'
miRNA:   3'- -CUCU-UGGCCGGa------UCGCaaGCCU--GGCG- -5'
14629 3' -56.7 NC_003521.1 + 91817 0.68 0.88407
Target:  5'- uGGggUCGGUCUggaucuggacgGGCGUgaaGGugCGCg -3'
miRNA:   3'- cUCuuGGCCGGA-----------UCGCAag-CCugGCG- -5'
14629 3' -56.7 NC_003521.1 + 101271 0.67 0.914804
Target:  5'- aGAG-GCUGGCCcagagcgcgUAGCuGUgcUCGGugCGCa -3'
miRNA:   3'- -CUCuUGGCCGG---------AUCG-CA--AGCCugGCG- -5'
14629 3' -56.7 NC_003521.1 + 102839 0.66 0.940088
Target:  5'- cGAGAAgCGcGCCagggcgcccgUGGCGUaggUCuGGGCCGUg -3'
miRNA:   3'- -CUCUUgGC-CGG----------AUCGCA---AG-CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 103121 0.67 0.935472
Target:  5'- aAGAGCUGGCgcAGCGcgCGGcgguGCUGCa -3'
miRNA:   3'- cUCUUGGCCGgaUCGCaaGCC----UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 103222 0.66 0.956389
Target:  5'- uGAGGucGCCGGCCaGGCGg-CGGcCCa- -3'
miRNA:   3'- -CUCU--UGGCCGGaUCGCaaGCCuGGcg -5'
14629 3' -56.7 NC_003521.1 + 107427 0.68 0.890641
Target:  5'- uGAGAGCCGacGCgaaAGCG--CGGACCGCc -3'
miRNA:   3'- -CUCUUGGC--CGga-UCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 108323 0.67 0.920302
Target:  5'- gGAGGAUUGGUCUGcacGgGUcUCuGGGCCGCa -3'
miRNA:   3'- -CUCUUGGCCGGAU---CgCA-AG-CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 111566 0.73 0.619603
Target:  5'- cGAGGugCGGCUgagccGGCGgguucCGGACUGCg -3'
miRNA:   3'- -CUCUugGCCGGa----UCGCaa---GCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 112412 0.67 0.930636
Target:  5'- --cGACCGGCCgc-CuUUCGGACCGa -3'
miRNA:   3'- cucUUGGCCGGaucGcAAGCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 115380 0.67 0.925579
Target:  5'- cAGGGCCGGCaugugcagGGCGcgggCGG-CCGCc -3'
miRNA:   3'- cUCUUGGCCGga------UCGCaa--GCCuGGCG- -5'
14629 3' -56.7 NC_003521.1 + 116336 0.68 0.897004
Target:  5'- aAGAGCU-GCUgacGCGgaCGGACCGCg -3'
miRNA:   3'- cUCUUGGcCGGau-CGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 117491 0.69 0.84821
Target:  5'- cGGcGCUggGGCCgucGGUGUUCGGACgGCu -3'
miRNA:   3'- cUCuUGG--CCGGa--UCGCAAGCCUGgCG- -5'
14629 3' -56.7 NC_003521.1 + 118201 0.67 0.914804
Target:  5'- cGGGGCC-GCCgAGCGcgCGGccGCCGCc -3'
miRNA:   3'- cUCUUGGcCGGaUCGCaaGCC--UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 118669 0.67 0.920302
Target:  5'- cGGggUCGGCUUcgggaGGCGg-CGGuACCGCu -3'
miRNA:   3'- cUCuuGGCCGGA-----UCGCaaGCC-UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 119780 0.71 0.754654
Target:  5'- uGGGACCGGCgcAGCGgcgacgaggUCGGcGCCGCc -3'
miRNA:   3'- cUCUUGGCCGgaUCGCa--------AGCC-UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 120906 0.67 0.935472
Target:  5'- cGGGGgCGGCUgcuuGCGUUUGcGGCUGCc -3'
miRNA:   3'- cUCUUgGCCGGau--CGCAAGC-CUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 121099 0.69 0.855765
Target:  5'- cGGAACUGGUCggugaagguggGGUGUUCgcuguacuggGGGCCGCg -3'
miRNA:   3'- cUCUUGGCCGGa----------UCGCAAG----------CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 121139 0.66 0.948667
Target:  5'- uGGAGCU-GCUgucGUGcUCGGACCGCa -3'
miRNA:   3'- cUCUUGGcCGGau-CGCaAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 124181 0.68 0.871019
Target:  5'- cGAGAgGCCGGCgUAGCugccgcugagGaacuccaccaccuugUCGGGCCGCa -3'
miRNA:   3'- -CUCU-UGGCCGgAUCG----------Ca--------------AGCCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.