miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 3' -56.7 NC_003521.1 + 37365 0.67 0.935472
Target:  5'- cGGGACUGGUCggcgacugcGGUGUUCGaGGCgGCg -3'
miRNA:   3'- cUCUUGGCCGGa--------UCGCAAGC-CUGgCG- -5'
14629 3' -56.7 NC_003521.1 + 37483 0.69 0.855018
Target:  5'- -uGGACgCGGUCUgccccccGGCGUuuUCGGGcCCGCg -3'
miRNA:   3'- cuCUUG-GCCGGA-------UCGCA--AGCCU-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 38632 0.67 0.914804
Target:  5'- aGAGGcgcGCCGGCUgGGUGUcccgCGGGuCCGUu -3'
miRNA:   3'- -CUCU---UGGCCGGaUCGCAa---GCCU-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 39428 0.73 0.629431
Target:  5'- cGAGAaaaugccgcuGCCGGCCgagcccGGCGccgaGGGCCGCg -3'
miRNA:   3'- -CUCU----------UGGCCGGa-----UCGCaag-CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 39611 0.71 0.763816
Target:  5'- --cGGCCGGCCcAGCGggagCaGACCGCc -3'
miRNA:   3'- cucUUGGCCGGaUCGCaa--GcCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 52309 0.67 0.925579
Target:  5'- uGGGGcccGCCGGCCUccucguaucucGGCGg-CGGACC-Ca -3'
miRNA:   3'- -CUCU---UGGCCGGA-----------UCGCaaGCCUGGcG- -5'
14629 3' -56.7 NC_003521.1 + 56897 0.7 0.807845
Target:  5'- cGAGAGCUGGCCgucGCGacaGcGCCGCa -3'
miRNA:   3'- -CUCUUGGCCGGau-CGCaagCcUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 59731 0.7 0.790621
Target:  5'- -cGAcacGCCGGaUCUGGCcUUCGGGCCGg -3'
miRNA:   3'- cuCU---UGGCC-GGAUCGcAAGCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 61621 0.67 0.925579
Target:  5'- aGAGAACCacguucagcGCCUccGGCuUUCugGGACCGCa -3'
miRNA:   3'- -CUCUUGGc--------CGGA--UCGcAAG--CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 63535 0.69 0.840473
Target:  5'- -cGAGCCcugGGCCcAGCGUcaCGGAgCCGCc -3'
miRNA:   3'- cuCUUGG---CCGGaUCGCAa-GCCU-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 66812 0.66 0.948259
Target:  5'- cAGGACCGGCUgaAGCGUaugugcuUCaGccGCCGCg -3'
miRNA:   3'- cUCUUGGCCGGa-UCGCA-------AGcC--UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 68514 0.75 0.551406
Target:  5'- --cGACCGGCCUGGCGccaccgacacCGGACgGCg -3'
miRNA:   3'- cucUUGGCCGGAUCGCaa--------GCCUGgCG- -5'
14629 3' -56.7 NC_003521.1 + 70100 0.68 0.88407
Target:  5'- aGGGcACCuGGCC-GGCGUgccgccgaaGGGCCGCu -3'
miRNA:   3'- -CUCuUGG-CCGGaUCGCAag-------CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 76845 0.67 0.925579
Target:  5'- cGGGAGaaGGCCcGGCGaccgccaucUUCGGcguCCGCg -3'
miRNA:   3'- -CUCUUggCCGGaUCGC---------AAGCCu--GGCG- -5'
14629 3' -56.7 NC_003521.1 + 77566 0.67 0.909088
Target:  5'- cGAG-ACCGGCgUcaaGGCGUUgaaGACCGCc -3'
miRNA:   3'- -CUCuUGGCCGgA---UCGCAAgc-CUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 77749 0.7 0.823664
Target:  5'- -cGGGCCGGCCUcGGCGU--GGcucuucacguaguGCCGCa -3'
miRNA:   3'- cuCUUGGCCGGA-UCGCAagCC-------------UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 77969 0.66 0.956389
Target:  5'- uGGAGCCGGCCg------CGGGCuCGCc -3'
miRNA:   3'- cUCUUGGCCGGaucgcaaGCCUG-GCG- -5'
14629 3' -56.7 NC_003521.1 + 88276 0.67 0.914243
Target:  5'- cGAGuGCUGGCugucgugcacgaaCUGGCGca-GGGCCGCc -3'
miRNA:   3'- -CUCuUGGCCG-------------GAUCGCaagCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 88447 0.67 0.930636
Target:  5'- gGAGAcgucguCC-GCCUcGGCG-UCGGGCUGCa -3'
miRNA:   3'- -CUCUu-----GGcCGGA-UCGCaAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 89120 0.68 0.890641
Target:  5'- cGAGGACCacgucuucaGCCUgaAGCugaCGGACCGCa -3'
miRNA:   3'- -CUCUUGGc--------CGGA--UCGcaaGCCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.