miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 3' -56.7 NC_003521.1 + 234592 0.71 0.726605
Target:  5'- cGGGAgcGCCGGUCUc-CaUUCGGACCGCc -3'
miRNA:   3'- -CUCU--UGGCCGGAucGcAAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 164256 0.71 0.736041
Target:  5'- cAGAAUCGuGCCggaGGCG--CGGACCGCc -3'
miRNA:   3'- cUCUUGGC-CGGa--UCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 119780 0.71 0.754654
Target:  5'- uGGGACCGGCgcAGCGgcgacgaggUCGGcGCCGCc -3'
miRNA:   3'- cUCUUGGCCGgaUCGCa--------AGCC-UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 239838 0.71 0.763816
Target:  5'- --cGGCCGGCCcAGCGggagCaGACCGCc -3'
miRNA:   3'- cucUUGGCCGGaUCGCaa--GcCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 31075 0.71 0.763816
Target:  5'- uGAGAACCGGCCaacAGCGacgacggCGGcgGCCGg -3'
miRNA:   3'- -CUCUUGGCCGGa--UCGCaa-----GCC--UGGCg -5'
14629 3' -56.7 NC_003521.1 + 212862 0.71 0.763816
Target:  5'- uGAGcGCC-GCCUGGCGUUUcuACCGCg -3'
miRNA:   3'- -CUCuUGGcCGGAUCGCAAGccUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 39611 0.71 0.763816
Target:  5'- --cGGCCGGCCcAGCGggagCaGACCGCc -3'
miRNA:   3'- cucUUGGCCGGaUCGCaa--GcCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 167474 0.71 0.772869
Target:  5'- aGAGGGaaGGCCUGaCGgucgUCGGGCCGg -3'
miRNA:   3'- -CUCUUggCCGGAUcGCa---AGCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 14751 0.71 0.772869
Target:  5'- -cGGGCCGGCC--GCGgcCGGGgCGCg -3'
miRNA:   3'- cuCUUGGCCGGauCGCaaGCCUgGCG- -5'
14629 3' -56.7 NC_003521.1 + 138909 0.7 0.781807
Target:  5'- cGAGuacGCCGGCUcGGUG-UCGGACCa- -3'
miRNA:   3'- -CUCu--UGGCCGGaUCGCaAGCCUGGcg -5'
14629 3' -56.7 NC_003521.1 + 59731 0.7 0.790621
Target:  5'- -cGAcacGCCGGaUCUGGCcUUCGGGCCGg -3'
miRNA:   3'- cuCU---UGGCC-GGAUCGcAAGCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 56897 0.7 0.807845
Target:  5'- cGAGAGCUGGCCgucGCGacaGcGCCGCa -3'
miRNA:   3'- -CUCUUGGCCGGau-CGCaagCcUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 196435 0.7 0.813738
Target:  5'- uGAGggUggaauaacgcaccuCGGCCUcgGGCGU--GGGCCGCa -3'
miRNA:   3'- -CUCuuG--------------GCCGGA--UCGCAagCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 20639 0.7 0.81624
Target:  5'- gGAGAGCCGcGCgCUGGUGggCGccuacgugauGACCGUg -3'
miRNA:   3'- -CUCUUGGC-CG-GAUCGCaaGC----------CUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 36500 0.7 0.81624
Target:  5'- aGGggUCGaCCaUGGCG-UCGGACUGCg -3'
miRNA:   3'- cUCuuGGCcGG-AUCGCaAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 77749 0.7 0.823664
Target:  5'- -cGGGCCGGCCUcGGCGU--GGcucuucacguaguGCCGCa -3'
miRNA:   3'- cuCUUGGCCGGA-UCGCAagCC-------------UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 130751 0.7 0.824481
Target:  5'- uAGAGCUGGCCUucGgGUaCGGACUGa -3'
miRNA:   3'- cUCUUGGCCGGAu-CgCAaGCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 222700 0.69 0.830154
Target:  5'- -cGGugCGGCCgGGCGUgCGGaucaccagguugagGCCGCu -3'
miRNA:   3'- cuCUugGCCGGaUCGCAaGCC--------------UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 150884 0.69 0.832561
Target:  5'- cGAGGugCGGCCgcacgccGGCGUcaUCG-ACUGCg -3'
miRNA:   3'- -CUCUugGCCGGa------UCGCA--AGCcUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 4573 0.69 0.832561
Target:  5'- cGGGGcacacGCCGGCCUccGGUuugcuaaCGGGCCGCg -3'
miRNA:   3'- -CUCU-----UGGCCGGA--UCGcaa----GCCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.