miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 3' -56.7 NC_003521.1 + 36769 0.67 0.935472
Target:  5'- aAGGACgcgcgUGGCCUGGCGggcguggaGGACgCGCc -3'
miRNA:   3'- cUCUUG-----GCCGGAUCGCaag-----CCUG-GCG- -5'
14629 3' -56.7 NC_003521.1 + 103121 0.67 0.935472
Target:  5'- aAGAGCUGGCgcAGCGcgCGGcgguGCUGCa -3'
miRNA:   3'- cUCUUGGCCGgaUCGCaaGCC----UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 89222 0.67 0.935472
Target:  5'- gGGGAcACCGGCCgaccuccAGCG--CGGAgaCCGCu -3'
miRNA:   3'- -CUCU-UGGCCGGa------UCGCaaGCCU--GGCG- -5'
14629 3' -56.7 NC_003521.1 + 120906 0.67 0.935472
Target:  5'- cGGGGgCGGCUgcuuGCGUUUGcGGCUGCc -3'
miRNA:   3'- cUCUUgGCCGGau--CGCAAGC-CUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 184088 0.67 0.935472
Target:  5'- -uGGACCa---UGGCGcUCGGACCGCu -3'
miRNA:   3'- cuCUUGGccggAUCGCaAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 125011 0.67 0.935472
Target:  5'- uGAGccacCCGcGCCUgAGCGg-CGGACUGCu -3'
miRNA:   3'- -CUCuu--GGC-CGGA-UCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 6460 0.67 0.934522
Target:  5'- cGAGAaacACCGGCacgaccagggcaUGGCGUg-GGAUCGUg -3'
miRNA:   3'- -CUCU---UGGCCGg-----------AUCGCAagCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 88447 0.67 0.930636
Target:  5'- gGAGAcgucguCC-GCCUcGGCG-UCGGGCUGCa -3'
miRNA:   3'- -CUCUu-----GGcCGGA-UCGCaAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 214157 0.67 0.930636
Target:  5'- aGGGAGCCgcggauGGCUUGGUcgacgggcaGUUCGGuggcaacguGCCGCa -3'
miRNA:   3'- -CUCUUGG------CCGGAUCG---------CAAGCC---------UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 36353 0.67 0.930636
Target:  5'- aGGGGCuCGGgCUGGCGUggcgCGGcuUCGCg -3'
miRNA:   3'- cUCUUG-GCCgGAUCGCAa---GCCu-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 187931 0.67 0.930636
Target:  5'- cGAGAGucCUGGUCgcguucGGCGUacgaCGGACUGCa -3'
miRNA:   3'- -CUCUU--GGCCGGa-----UCGCAa---GCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 112412 0.67 0.930636
Target:  5'- --cGACCGGCCgc-CuUUCGGACCGa -3'
miRNA:   3'- cucUUGGCCGGaucGcAAGCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 124424 0.67 0.930636
Target:  5'- cGAGAucuccucguCCGGCg-AGaCGUggUUGGGCCGCg -3'
miRNA:   3'- -CUCUu--------GGCCGgaUC-GCA--AGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 76845 0.67 0.925579
Target:  5'- cGGGAGaaGGCCcGGCGaccgccaucUUCGGcguCCGCg -3'
miRNA:   3'- -CUCUUggCCGGaUCGC---------AAGCCu--GGCG- -5'
14629 3' -56.7 NC_003521.1 + 23485 0.67 0.925579
Target:  5'- cGAGGACCGGCCgc-CGUcCGccACCGUg -3'
miRNA:   3'- -CUCUUGGCCGGaucGCAaGCc-UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 61621 0.67 0.925579
Target:  5'- aGAGAACCacguucagcGCCUccGGCuUUCugGGACCGCa -3'
miRNA:   3'- -CUCUUGGc--------CGGA--UCGcAAG--CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 115380 0.67 0.925579
Target:  5'- cAGGGCCGGCaugugcagGGCGcgggCGG-CCGCc -3'
miRNA:   3'- cUCUUGGCCGga------UCGCaa--GCCuGGCG- -5'
14629 3' -56.7 NC_003521.1 + 20921 0.67 0.925579
Target:  5'- cGGGGACCGGUCUcaaucgcacGCGggUCGGAgCGa -3'
miRNA:   3'- -CUCUUGGCCGGAu--------CGCa-AGCCUgGCg -5'
14629 3' -56.7 NC_003521.1 + 52309 0.67 0.925579
Target:  5'- uGGGGcccGCCGGCCUccucguaucucGGCGg-CGGACC-Ca -3'
miRNA:   3'- -CUCU---UGGCCGGA-----------UCGCaaGCCUGGcG- -5'
14629 3' -56.7 NC_003521.1 + 207983 0.67 0.925579
Target:  5'- cAGAcccuGCCGGUUUgcgacgucAGCGaguacgucuuUUCGGACCGCc -3'
miRNA:   3'- cUCU----UGGCCGGA--------UCGC----------AAGCCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.