Results 21 - 40 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14629 | 3' | -56.7 | NC_003521.1 | + | 238859 | 0.67 | 0.914804 |
Target: 5'- aGAGGcgcGCCGGCUgGGUGUcccgCGGGuCCGUu -3' miRNA: 3'- -CUCU---UGGCCGGaUCGCAa---GCCU-GGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 20921 | 0.67 | 0.925579 |
Target: 5'- cGGGGACCGGUCUcaaucgcacGCGggUCGGAgCGa -3' miRNA: 3'- -CUCUUGGCCGGAu--------CGCa-AGCCUgGCg -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 52309 | 0.67 | 0.925579 |
Target: 5'- uGGGGcccGCCGGCCUccucguaucucGGCGg-CGGACC-Ca -3' miRNA: 3'- -CUCU---UGGCCGGA-----------UCGCaaGCCUGGcG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 214157 | 0.67 | 0.930636 |
Target: 5'- aGGGAGCCgcggauGGCUUGGUcgacgggcaGUUCGGuggcaacguGCCGCa -3' miRNA: 3'- -CUCUUGG------CCGGAUCG---------CAAGCC---------UGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 88447 | 0.67 | 0.930636 |
Target: 5'- gGAGAcgucguCC-GCCUcGGCG-UCGGGCUGCa -3' miRNA: 3'- -CUCUu-----GGcCGGA-UCGCaAGCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 88276 | 0.67 | 0.914243 |
Target: 5'- cGAGuGCUGGCugucgugcacgaaCUGGCGca-GGGCCGCc -3' miRNA: 3'- -CUCuUGGCCG-------------GAUCGCaagCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 133172 | 0.67 | 0.909088 |
Target: 5'- cGGGACaccagcaguggCGGCCUcGGCGaUCGGgacgACCGCg -3' miRNA: 3'- cUCUUG-----------GCCGGA-UCGCaAGCC----UGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 77566 | 0.67 | 0.909088 |
Target: 5'- cGAG-ACCGGCgUcaaGGCGUUgaaGACCGCc -3' miRNA: 3'- -CUCuUGGCCGgA---UCGCAAgc-CUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 120906 | 0.67 | 0.935472 |
Target: 5'- cGGGGgCGGCUgcuuGCGUUUGcGGCUGCc -3' miRNA: 3'- cUCUUgGCCGGau--CGCAAGC-CUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 89222 | 0.67 | 0.935472 |
Target: 5'- gGGGAcACCGGCCgaccuccAGCG--CGGAgaCCGCu -3' miRNA: 3'- -CUCU-UGGCCGGa------UCGCaaGCCU--GGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 36769 | 0.67 | 0.935472 |
Target: 5'- aAGGACgcgcgUGGCCUGGCGggcguggaGGACgCGCc -3' miRNA: 3'- cUCUUG-----GCCGGAUCGCaag-----CCUG-GCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 184088 | 0.67 | 0.935472 |
Target: 5'- -uGGACCa---UGGCGcUCGGACCGCu -3' miRNA: 3'- cuCUUGGccggAUCGCaAGCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 38632 | 0.67 | 0.914804 |
Target: 5'- aGAGGcgcGCCGGCUgGGUGUcccgCGGGuCCGUu -3' miRNA: 3'- -CUCU---UGGCCGGaUCGCAa---GCCU-GGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 76845 | 0.67 | 0.925579 |
Target: 5'- cGGGAGaaGGCCcGGCGaccgccaucUUCGGcguCCGCg -3' miRNA: 3'- -CUCUUggCCGGaUCGC---------AAGCCu--GGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 23485 | 0.67 | 0.925579 |
Target: 5'- cGAGGACCGGCCgc-CGUcCGccACCGUg -3' miRNA: 3'- -CUCUUGGCCGGaucGCAaGCc-UGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 37365 | 0.67 | 0.935472 |
Target: 5'- cGGGACUGGUCggcgacugcGGUGUUCGaGGCgGCg -3' miRNA: 3'- cUCUUGGCCGGa--------UCGCAAGC-CUGgCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 207983 | 0.67 | 0.925579 |
Target: 5'- cAGAcccuGCCGGUUUgcgacgucAGCGaguacgucuuUUCGGACCGCc -3' miRNA: 3'- cUCU----UGGCCGGA--------UCGC----------AAGCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 61621 | 0.67 | 0.925579 |
Target: 5'- aGAGAACCacguucagcGCCUccGGCuUUCugGGACCGCa -3' miRNA: 3'- -CUCUUGGc--------CGGA--UCGcAAG--CCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 103121 | 0.67 | 0.935472 |
Target: 5'- aAGAGCUGGCgcAGCGcgCGGcgguGCUGCa -3' miRNA: 3'- cUCUUGGCCGgaUCGCaaGCC----UGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 159640 | 0.67 | 0.935472 |
Target: 5'- cAGAucGCCgaGGCCUGGUGcgUGGACCa- -3' miRNA: 3'- cUCU--UGG--CCGGAUCGCaaGCCUGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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