miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 3' -56.7 NC_003521.1 + 36769 0.67 0.935472
Target:  5'- aAGGACgcgcgUGGCCUGGCGggcguggaGGACgCGCc -3'
miRNA:   3'- cUCUUG-----GCCGGAUCGCaag-----CCUG-GCG- -5'
14629 3' -56.7 NC_003521.1 + 37365 0.67 0.935472
Target:  5'- cGGGACUGGUCggcgacugcGGUGUUCGaGGCgGCg -3'
miRNA:   3'- cUCUUGGCCGGa--------UCGCAAGC-CUGgCG- -5'
14629 3' -56.7 NC_003521.1 + 61621 0.67 0.925579
Target:  5'- aGAGAACCacguucagcGCCUccGGCuUUCugGGACCGCa -3'
miRNA:   3'- -CUCUUGGc--------CGGA--UCGcAAG--CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 36353 0.67 0.930636
Target:  5'- aGGGGCuCGGgCUGGCGUggcgCGGcuUCGCg -3'
miRNA:   3'- cUCUUG-GCCgGAUCGCAa---GCCu-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 23485 0.67 0.925579
Target:  5'- cGAGGACCGGCCgc-CGUcCGccACCGUg -3'
miRNA:   3'- -CUCUUGGCCGGaucGCAaGCc-UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 77566 0.67 0.909088
Target:  5'- cGAG-ACCGGCgUcaaGGCGUUgaaGACCGCc -3'
miRNA:   3'- -CUCuUGGCCGgA---UCGCAAgc-CUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 108323 0.67 0.920302
Target:  5'- gGAGGAUUGGUCUGcacGgGUcUCuGGGCCGCa -3'
miRNA:   3'- -CUCUUGGCCGGAU---CgCA-AG-CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 103121 0.67 0.935472
Target:  5'- aAGAGCUGGCgcAGCGcgCGGcgguGCUGCa -3'
miRNA:   3'- cUCUUGGCCGgaUCGCaaGCC----UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 133363 0.67 0.914804
Target:  5'- gGAGAucagcacgguccGCCGGCacAGCGcggCGGuCCGCg -3'
miRNA:   3'- -CUCU------------UGGCCGgaUCGCaa-GCCuGGCG- -5'
14629 3' -56.7 NC_003521.1 + 118201 0.67 0.914804
Target:  5'- cGGGGCC-GCCgAGCGcgCGGccGCCGCc -3'
miRNA:   3'- cUCUUGGcCGGaUCGCaaGCC--UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 159822 0.67 0.914804
Target:  5'- -cGGACCGGCCgugaGGCGcugcgCGGAggCGCg -3'
miRNA:   3'- cuCUUGGCCGGa---UCGCaa---GCCUg-GCG- -5'
14629 3' -56.7 NC_003521.1 + 101271 0.67 0.914804
Target:  5'- aGAG-GCUGGCCcagagcgcgUAGCuGUgcUCGGugCGCa -3'
miRNA:   3'- -CUCuUGGCCGG---------AUCG-CA--AGCCugGCG- -5'
14629 3' -56.7 NC_003521.1 + 88276 0.67 0.914243
Target:  5'- cGAGuGCUGGCugucgugcacgaaCUGGCGca-GGGCCGCc -3'
miRNA:   3'- -CUCuUGGCCG-------------GAUCGCaagCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 133172 0.67 0.909088
Target:  5'- cGGGACaccagcaguggCGGCCUcGGCGaUCGGgacgACCGCg -3'
miRNA:   3'- cUCUUG-----------GCCGGA-UCGCaAGCC----UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 124181 0.68 0.871019
Target:  5'- cGAGAgGCCGGCgUAGCugccgcugagGaacuccaccaccuugUCGGGCCGCa -3'
miRNA:   3'- -CUCU-UGGCCGgAUCG----------Ca--------------AGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 198271 0.68 0.870312
Target:  5'- cGGAcaGCCaGCCgGGCGUcgcggaGGACCGCu -3'
miRNA:   3'- cUCU--UGGcCGGaUCGCAag----CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 19958 0.68 0.890641
Target:  5'- uGAGGugGCCGGgCUGGCGgugaUCGuGACCu- -3'
miRNA:   3'- -CUCU--UGGCCgGAUCGCa---AGC-CUGGcg -5'
14629 3' -56.7 NC_003521.1 + 154110 0.68 0.870312
Target:  5'- aAGAACCGGCCcaucucGCGgcCGGGCaaggGCg -3'
miRNA:   3'- cUCUUGGCCGGau----CGCaaGCCUGg---CG- -5'
14629 3' -56.7 NC_003521.1 + 150335 0.68 0.890641
Target:  5'- cGGGACacggccccgucuCGGCCgaggucuGCGUgCGGACCGUg -3'
miRNA:   3'- cUCUUG------------GCCGGau-----CGCAaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 192654 0.68 0.88407
Target:  5'- cGGGAACuCGGgCUugGGCGUcUUGGGCuCGCc -3'
miRNA:   3'- -CUCUUG-GCCgGA--UCGCA-AGCCUG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.