miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 3' -56.7 NC_003521.1 + 167474 0.71 0.772869
Target:  5'- aGAGGGaaGGCCUGaCGgucgUCGGGCCGg -3'
miRNA:   3'- -CUCUUggCCGGAUcGCa---AGCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 138909 0.7 0.781807
Target:  5'- cGAGuacGCCGGCUcGGUG-UCGGACCa- -3'
miRNA:   3'- -CUCu--UGGCCGGaUCGCaAGCCUGGcg -5'
14629 3' -56.7 NC_003521.1 + 77566 0.67 0.909088
Target:  5'- cGAG-ACCGGCgUcaaGGCGUUgaaGACCGCc -3'
miRNA:   3'- -CUCuUGGCCGgA---UCGCAAgc-CUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 150335 0.68 0.890641
Target:  5'- cGGGACacggccccgucuCGGCCgaggucuGCGUgCGGACCGUg -3'
miRNA:   3'- cUCUUG------------GCCGGau-----CGCAaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 192654 0.68 0.88407
Target:  5'- cGGGAACuCGGgCUugGGCGUcUUGGGCuCGCc -3'
miRNA:   3'- -CUCUUG-GCCgGA--UCGCA-AGCCUG-GCG- -5'
14629 3' -56.7 NC_003521.1 + 70100 0.68 0.88407
Target:  5'- aGGGcACCuGGCC-GGCGUgccgccgaaGGGCCGCu -3'
miRNA:   3'- -CUCuUGG-CCGGaUCGCAag-------CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 121099 0.69 0.855765
Target:  5'- cGGAACUGGUCggugaagguggGGUGUUCgcuguacuggGGGCCGCg -3'
miRNA:   3'- cUCUUGGCCGGa----------UCGCAAG----------CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 17758 0.69 0.855765
Target:  5'- gGGGAACUGGCCguaccgccGGCGg-CGGACgGUc -3'
miRNA:   3'- -CUCUUGGCCGGa-------UCGCaaGCCUGgCG- -5'
14629 3' -56.7 NC_003521.1 + 63535 0.69 0.840473
Target:  5'- -cGAGCCcugGGCCcAGCGUcaCGGAgCCGCc -3'
miRNA:   3'- cuCUUGG---CCGGaUCGCAa-GCCU-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 137865 0.69 0.840473
Target:  5'- cAGAGCCccgacGCCcgAGCGccUGGACCGCg -3'
miRNA:   3'- cUCUUGGc----CGGa-UCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 150884 0.69 0.832561
Target:  5'- cGAGGugCGGCCgcacgccGGCGUcaUCG-ACUGCg -3'
miRNA:   3'- -CUCUugGCCGGa------UCGCA--AGCcUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 4573 0.69 0.832561
Target:  5'- cGGGGcacacGCCGGCCUccGGUuugcuaaCGGGCCGCg -3'
miRNA:   3'- -CUCU-----UGGCCGGA--UCGcaa----GCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 222700 0.69 0.830154
Target:  5'- -cGGugCGGCCgGGCGUgCGGaucaccagguugagGCCGCu -3'
miRNA:   3'- cuCUugGCCGGaUCGCAaGCC--------------UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 56897 0.7 0.807845
Target:  5'- cGAGAGCUGGCCgucGCGacaGcGCCGCa -3'
miRNA:   3'- -CUCUUGGCCGGau-CGCaagCcUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 146777 0.74 0.599978
Target:  5'- uGGAACCGGCCUGGacaGaaggCGGGCCccgGCg -3'
miRNA:   3'- cUCUUGGCCGGAUCg--Caa--GCCUGG---CG- -5'
14629 3' -56.7 NC_003521.1 + 187610 0.74 0.57072
Target:  5'- -uGGGCaCGGCCUgccgGGCGagcCGGGCCGCg -3'
miRNA:   3'- cuCUUG-GCCGGA----UCGCaa-GCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 213551 0.75 0.551406
Target:  5'- cGAG-ACCcGCCUGGCcUUCGuGGCCGCa -3'
miRNA:   3'- -CUCuUGGcCGGAUCGcAAGC-CUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 188108 0.75 0.551406
Target:  5'- gGAGAccaACCGGgcucacuuUCUAGCGcgCGGACUGCa -3'
miRNA:   3'- -CUCU---UGGCC--------GGAUCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 196968 0.78 0.374835
Target:  5'- cGGGAGCCGGCCggGGCGccugugaCGGGcCCGCg -3'
miRNA:   3'- -CUCUUGGCCGGa-UCGCaa-----GCCU-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 77969 0.66 0.956389
Target:  5'- uGGAGCCGGCCg------CGGGCuCGCc -3'
miRNA:   3'- cUCUUGGCCGGaucgcaaGCCUG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.