miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 3' -56.7 NC_003521.1 + 227052 1.12 0.002925
Target:  5'- uGAGAACCGGCCUAGCGUUCGGACCGCa -3'
miRNA:   3'- -CUCUUGGCCGGAUCGCAAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 155483 0.83 0.214023
Target:  5'- aGAGAcGCCGGCCU-GCGg-CGGGCCGCg -3'
miRNA:   3'- -CUCU-UGGCCGGAuCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 196968 0.78 0.374835
Target:  5'- cGGGAGCCGGCCggGGCGccugugaCGGGcCCGCg -3'
miRNA:   3'- -CUCUUGGCCGGa-UCGCaa-----GCCU-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 186622 0.77 0.432417
Target:  5'- cGGAcACCGGCCagcAGCGgUCGGGCUGCu -3'
miRNA:   3'- cUCU-UGGCCGGa--UCGCaAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 68514 0.75 0.551406
Target:  5'- --cGACCGGCCUGGCGccaccgacacCGGACgGCg -3'
miRNA:   3'- cucUUGGCCGGAUCGCaa--------GCCUGgCG- -5'
14629 3' -56.7 NC_003521.1 + 213551 0.75 0.551406
Target:  5'- cGAG-ACCcGCCUGGCcUUCGuGGCCGCa -3'
miRNA:   3'- -CUCuUGGcCGGAUCGcAAGC-CUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 188108 0.75 0.551406
Target:  5'- gGAGAccaACCGGgcucacuuUCUAGCGcgCGGACUGCa -3'
miRNA:   3'- -CUCU---UGGCC--------GGAUCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 187610 0.74 0.57072
Target:  5'- -uGGGCaCGGCCUgccgGGCGagcCGGGCCGCg -3'
miRNA:   3'- cuCUUG-GCCGGA----UCGCaa-GCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 213032 0.74 0.597041
Target:  5'- -cGAGCCGGCCgAGCGggcCGGAguagguuucuuccuCCGCg -3'
miRNA:   3'- cuCUUGGCCGGaUCGCaa-GCCU--------------GGCG- -5'
14629 3' -56.7 NC_003521.1 + 146777 0.74 0.599978
Target:  5'- uGGAACCGGCCUGGacaGaaggCGGGCCccgGCg -3'
miRNA:   3'- cUCUUGGCCGGAUCg--Caa--GCCUGG---CG- -5'
14629 3' -56.7 NC_003521.1 + 111566 0.73 0.619603
Target:  5'- cGAGGugCGGCUgagccGGCGgguucCGGACUGCg -3'
miRNA:   3'- -CUCUugGCCGGa----UCGCaa---GCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 214506 0.73 0.619603
Target:  5'- gGAGAGCCGGCCcuggaAGCG--CGGACagCGCg -3'
miRNA:   3'- -CUCUUGGCCGGa----UCGCaaGCCUG--GCG- -5'
14629 3' -56.7 NC_003521.1 + 200286 0.73 0.628448
Target:  5'- cGGAACCGGUUUccgcggcGGCGUgcggCGGGCCGg -3'
miRNA:   3'- cUCUUGGCCGGA-------UCGCAa---GCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 240607 0.73 0.628448
Target:  5'- cGGAACCGGUUUccgcggcGGCGUgcggCGGGCCGg -3'
miRNA:   3'- cUCUUGGCCGGA-------UCGCAa---GCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 58 0.73 0.628448
Target:  5'- cGGAACCGGUUUccgcggcGGCGUgcggCGGGCCGg -3'
miRNA:   3'- cUCUUGGCCGGA-------UCGCAa---GCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 36588 0.73 0.629431
Target:  5'- -cGAACUGGCCUGGCGg-CGGgugGCCGa -3'
miRNA:   3'- cuCUUGGCCGGAUCGCaaGCC---UGGCg -5'
14629 3' -56.7 NC_003521.1 + 39428 0.73 0.629431
Target:  5'- cGAGAaaaugccgcuGCCGGCCgagcccGGCGccgaGGGCCGCg -3'
miRNA:   3'- -CUCU----------UGGCCGGa-----UCGCaag-CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 208945 0.73 0.629431
Target:  5'- -----gCGGCCUGGCGgugCGGuACCGCu -3'
miRNA:   3'- cucuugGCCGGAUCGCaa-GCC-UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 30216 0.73 0.658901
Target:  5'- cGAGAucgGCCGGCCguUGGCG-UCGcGCUGCa -3'
miRNA:   3'- -CUCU---UGGCCGG--AUCGCaAGCcUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 142642 0.73 0.668694
Target:  5'- gGAGAACCgcGGCCUcAGCGgUCGGcgcagcGCCGUc -3'
miRNA:   3'- -CUCUUGG--CCGGA-UCGCaAGCC------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.