miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 3' -56.7 NC_003521.1 + 198271 0.68 0.870312
Target:  5'- cGGAcaGCCaGCCgGGCGUcgcggaGGACCGCu -3'
miRNA:   3'- cUCU--UGGcCGGaUCGCAag----CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 196968 0.78 0.374835
Target:  5'- cGGGAGCCGGCCggGGCGccugugaCGGGcCCGCg -3'
miRNA:   3'- -CUCUUGGCCGGa-UCGCaa-----GCCU-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 196435 0.7 0.813738
Target:  5'- uGAGggUggaauaacgcaccuCGGCCUcgGGCGU--GGGCCGCa -3'
miRNA:   3'- -CUCuuG--------------GCCGGA--UCGCAagCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 193177 0.69 0.832561
Target:  5'- aGGAGCCGGCgggAGCGg-CGGAgCGUg -3'
miRNA:   3'- cUCUUGGCCGga-UCGCaaGCCUgGCG- -5'
14629 3' -56.7 NC_003521.1 + 192654 0.68 0.88407
Target:  5'- cGGGAACuCGGgCUugGGCGUcUUGGGCuCGCc -3'
miRNA:   3'- -CUCUUG-GCCgGA--UCGCA-AGCCUG-GCG- -5'
14629 3' -56.7 NC_003521.1 + 188108 0.75 0.551406
Target:  5'- gGAGAccaACCGGgcucacuuUCUAGCGcgCGGACUGCa -3'
miRNA:   3'- -CUCU---UGGCC--------GGAUCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 187931 0.67 0.930636
Target:  5'- cGAGAGucCUGGUCgcguucGGCGUacgaCGGACUGCa -3'
miRNA:   3'- -CUCUU--GGCCGGa-----UCGCAa---GCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 187610 0.74 0.57072
Target:  5'- -uGGGCaCGGCCUgccgGGCGagcCGGGCCGCg -3'
miRNA:   3'- cuCUUG-GCCGGA----UCGCaa-GCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 186622 0.77 0.432417
Target:  5'- cGGAcACCGGCCagcAGCGgUCGGGCUGCu -3'
miRNA:   3'- cUCU-UGGCCGGa--UCGCaAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 184088 0.67 0.935472
Target:  5'- -uGGACCa---UGGCGcUCGGACCGCu -3'
miRNA:   3'- cuCUUGGccggAUCGCaAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 169994 0.69 0.832561
Target:  5'- gGGGGACgcuuuccaugaGGCCUugcuGCGccucUUCGGGCCGCu -3'
miRNA:   3'- -CUCUUGg----------CCGGAu---CGC----AAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 169336 0.66 0.940088
Target:  5'- --cGGCCGGCgUGGU-UUCGGGuuGCg -3'
miRNA:   3'- cucUUGGCCGgAUCGcAAGCCUggCG- -5'
14629 3' -56.7 NC_003521.1 + 167474 0.71 0.772869
Target:  5'- aGAGGGaaGGCCUGaCGgucgUCGGGCCGg -3'
miRNA:   3'- -CUCUUggCCGGAUcGCa---AGCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 166615 0.69 0.832561
Target:  5'- cAGGACgUGGCagaagacGGCG-UCGGGCCGCg -3'
miRNA:   3'- cUCUUG-GCCGga-----UCGCaAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 166243 0.67 0.920302
Target:  5'- -uGAugCcGCCcGGCGagCGGGCCGUg -3'
miRNA:   3'- cuCUugGcCGGaUCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 165259 0.66 0.948667
Target:  5'- cGAGGACaggagGGCgCUGGCGUagccgccgcCGGcGCCGCu -3'
miRNA:   3'- -CUCUUGg----CCG-GAUCGCAa--------GCC-UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 164256 0.71 0.736041
Target:  5'- cAGAAUCGuGCCggaGGCG--CGGACCGCc -3'
miRNA:   3'- cUCUUGGC-CGGa--UCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 159822 0.67 0.914804
Target:  5'- -cGGACCGGCCgugaGGCGcugcgCGGAggCGCg -3'
miRNA:   3'- cuCUUGGCCGGa---UCGCaa---GCCUg-GCG- -5'
14629 3' -56.7 NC_003521.1 + 159640 0.67 0.935472
Target:  5'- cAGAucGCCgaGGCCUGGUGcgUGGACCa- -3'
miRNA:   3'- cUCU--UGG--CCGGAUCGCaaGCCUGGcg -5'
14629 3' -56.7 NC_003521.1 + 156128 0.67 0.920302
Target:  5'- gGAG-GCCGGCCUGGa----GGugUGCa -3'
miRNA:   3'- -CUCuUGGCCGGAUCgcaagCCugGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.