miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 3' -56.7 NC_003521.1 + 240607 0.73 0.628448
Target:  5'- cGGAACCGGUUUccgcggcGGCGUgcggCGGGCCGg -3'
miRNA:   3'- cUCUUGGCCGGA-------UCGCAa---GCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 239838 0.71 0.763816
Target:  5'- --cGGCCGGCCcAGCGggagCaGACCGCc -3'
miRNA:   3'- cucUUGGCCGGaUCGCaa--GcCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 238859 0.67 0.914804
Target:  5'- aGAGGcgcGCCGGCUgGGUGUcccgCGGGuCCGUu -3'
miRNA:   3'- -CUCU---UGGCCGGaUCGCAa---GCCU-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 234592 0.71 0.726605
Target:  5'- cGGGAgcGCCGGUCUc-CaUUCGGACCGCc -3'
miRNA:   3'- -CUCU--UGGCCGGAucGcAAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 229216 0.66 0.956023
Target:  5'- uGAGAuugcgauACCcGCC-AGUGgacccgCGGGCCGCg -3'
miRNA:   3'- -CUCU-------UGGcCGGaUCGCaa----GCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 227052 1.12 0.002925
Target:  5'- uGAGAACCGGCCUAGCGUUCGGACCGCa -3'
miRNA:   3'- -CUCUUGGCCGGAUCGCAAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 226753 0.66 0.940088
Target:  5'- uGAGcaagcaauCCGGCU--GCGgaCGGACCGUa -3'
miRNA:   3'- -CUCuu------GGCCGGauCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 222700 0.69 0.830154
Target:  5'- -cGGugCGGCCgGGCGUgCGGaucaccagguugagGCCGCu -3'
miRNA:   3'- cuCUugGCCGGaUCGCAaGCC--------------UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 217606 0.66 0.944486
Target:  5'- -cGGACCaGCaggGGCGUcUCGG-CCGCc -3'
miRNA:   3'- cuCUUGGcCGga-UCGCA-AGCCuGGCG- -5'
14629 3' -56.7 NC_003521.1 + 214506 0.73 0.619603
Target:  5'- gGAGAGCCGGCCcuggaAGCG--CGGACagCGCg -3'
miRNA:   3'- -CUCUUGGCCGGa----UCGCaaGCCUG--GCG- -5'
14629 3' -56.7 NC_003521.1 + 214157 0.67 0.930636
Target:  5'- aGGGAGCCgcggauGGCUUGGUcgacgggcaGUUCGGuggcaacguGCCGCa -3'
miRNA:   3'- -CUCUUGG------CCGGAUCG---------CAAGCC---------UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 213551 0.75 0.551406
Target:  5'- cGAG-ACCcGCCUGGCcUUCGuGGCCGCa -3'
miRNA:   3'- -CUCuUGGcCGGAUCGcAAGC-CUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 213290 0.68 0.897004
Target:  5'- gGAG-ACCGucuacGCCaccgugGGCGccUCGGGCCGCa -3'
miRNA:   3'- -CUCuUGGC-----CGGa-----UCGCa-AGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 213032 0.74 0.597041
Target:  5'- -cGAGCCGGCCgAGCGggcCGGAguagguuucuuccuCCGCg -3'
miRNA:   3'- cuCUUGGCCGGaUCGCaa-GCCU--------------GGCG- -5'
14629 3' -56.7 NC_003521.1 + 212862 0.71 0.763816
Target:  5'- uGAGcGCC-GCCUGGCGUUUcuACCGCg -3'
miRNA:   3'- -CUCuUGGcCGGAUCGCAAGccUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 210015 0.66 0.952634
Target:  5'- cGGGuuucGCCGGCg-GGCccUCGGugCGCu -3'
miRNA:   3'- -CUCu---UGGCCGgaUCGcaAGCCugGCG- -5'
14629 3' -56.7 NC_003521.1 + 208945 0.73 0.629431
Target:  5'- -----gCGGCCUGGCGgugCGGuACCGCu -3'
miRNA:   3'- cucuugGCCGGAUCGCaa-GCC-UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 208595 0.66 0.952634
Target:  5'- -cGAGUgGGaCCUGGcCGUcUGGGCCGCg -3'
miRNA:   3'- cuCUUGgCC-GGAUC-GCAaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 207983 0.67 0.925579
Target:  5'- cAGAcccuGCCGGUUUgcgacgucAGCGaguacgucuuUUCGGACCGCc -3'
miRNA:   3'- cUCU----UGGCCGGA--------UCGC----------AAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 200286 0.73 0.628448
Target:  5'- cGGAACCGGUUUccgcggcGGCGUgcggCGGGCCGg -3'
miRNA:   3'- cUCUUGGCCGGA-------UCGCAa---GCCUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.