miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 3' -59.6 NC_003521.1 + 164794 0.66 0.821318
Target:  5'- -gCACgGGUCgUCGggGaCGAUCCCGGAGc -3'
miRNA:   3'- agGUG-CCGG-GGCuuC-GCUAGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 40496 0.67 0.813069
Target:  5'- gCCACGGCgCCGcAGCGcAUCUC-GAAc -3'
miRNA:   3'- aGGUGCCGgGGCuUCGC-UAGGGuCUU- -5'
14630 3' -59.6 NC_003521.1 + 101262 0.67 0.813069
Target:  5'- --aGCGGCUCCaGAGGCuggCCCAGAGc -3'
miRNA:   3'- aggUGCCGGGG-CUUCGcuaGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 106760 0.67 0.813069
Target:  5'- gUCCAgGGCgCCC-AGGCGGUCgaaaCCAGGc -3'
miRNA:   3'- -AGGUgCCG-GGGcUUCGCUAG----GGUCUu -5'
14630 3' -59.6 NC_003521.1 + 144866 0.67 0.813069
Target:  5'- cCCGCGGguCCCCGAAcCGcAUCCguGAGg -3'
miRNA:   3'- aGGUGCC--GGGGCUUcGC-UAGGguCUU- -5'
14630 3' -59.6 NC_003521.1 + 1 0.67 0.80467
Target:  5'- -CCGaucCGGCCuCCGcuGCgGGUCCCGGGGg -3'
miRNA:   3'- aGGU---GCCGG-GGCuuCG-CUAGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 63856 0.67 0.799562
Target:  5'- gUCCAaGGCCCUGAcacgguggacgaggcGGCGcgCCgGGAGc -3'
miRNA:   3'- -AGGUgCCGGGGCU---------------UCGCuaGGgUCUU- -5'
14630 3' -59.6 NC_003521.1 + 181610 0.67 0.787453
Target:  5'- gUCCAgGGCCCCGAucuccacGCGA--CUAGGAu -3'
miRNA:   3'- -AGGUgCCGGGGCUu------CGCUagGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 80512 0.67 0.787453
Target:  5'- cCCACGGCUCCGAuGGCcGUgCCCAc-- -3'
miRNA:   3'- aGGUGCCGGGGCU-UCGcUA-GGGUcuu -5'
14630 3' -59.6 NC_003521.1 + 59615 0.67 0.786578
Target:  5'- gCgGCGGCCCCGGcGGCGAccgcggcUCgCAGGc -3'
miRNA:   3'- aGgUGCCGGGGCU-UCGCU-------AGgGUCUu -5'
14630 3' -59.6 NC_003521.1 + 122152 0.67 0.769727
Target:  5'- -gCACGuGCCCCGAGaUGGggCCCAGGAc -3'
miRNA:   3'- agGUGC-CGGGGCUUcGCUa-GGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 89474 0.68 0.757962
Target:  5'- aUCGCGGUCCgCaGAGCGGgaagagcaggacggUCCCAGAAa -3'
miRNA:   3'- aGGUGCCGGG-GcUUCGCU--------------AGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 210962 0.68 0.751554
Target:  5'- gCCACGGCCUUcu-GCG-UCCCGGGc -3'
miRNA:   3'- aGGUGCCGGGGcuuCGCuAGGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 116809 0.68 0.751554
Target:  5'- gCCGCGaCCCCGAcugggugcugcAGCGGuUUCCAGAc -3'
miRNA:   3'- aGGUGCcGGGGCU-----------UCGCU-AGGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 161141 0.68 0.74232
Target:  5'- -aCGCGGCCgCG-GGCGGUCgCGGAc -3'
miRNA:   3'- agGUGCCGGgGCuUCGCUAGgGUCUu -5'
14630 3' -59.6 NC_003521.1 + 4535 0.68 0.74232
Target:  5'- aCCGCaucGCCCCGAGGCGuugcUCUgAGGAu -3'
miRNA:   3'- aGGUGc--CGGGGCUUCGCu---AGGgUCUU- -5'
14630 3' -59.6 NC_003521.1 + 64769 0.68 0.732998
Target:  5'- -gCGCGGCaCCG-GGCGAUCCCAa-- -3'
miRNA:   3'- agGUGCCGgGGCuUCGCUAGGGUcuu -5'
14630 3' -59.6 NC_003521.1 + 84042 0.68 0.723596
Target:  5'- gUCCACGGCCaCCuucucGAGCGAgaggCCCuGGc -3'
miRNA:   3'- -AGGUGCCGG-GGc----UUCGCUa---GGGuCUu -5'
14630 3' -59.6 NC_003521.1 + 209272 0.68 0.723596
Target:  5'- aCCugGGCUUCGccGAGUGGUCgCAGAc -3'
miRNA:   3'- aGGugCCGGGGC--UUCGCUAGgGUCUu -5'
14630 3' -59.6 NC_003521.1 + 186478 0.69 0.694994
Target:  5'- gCCAC-GCCCCG-AGUGG-CCCAGGg -3'
miRNA:   3'- aGGUGcCGGGGCuUCGCUaGGGUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.