miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 3' -59.6 NC_003521.1 + 105056 0.69 0.665959
Target:  5'- -gCGCGagcaGCCCCaGggGCGAUCCCAc-- -3'
miRNA:   3'- agGUGC----CGGGG-CuuCGCUAGGGUcuu -5'
14630 3' -59.6 NC_003521.1 + 106760 0.67 0.813069
Target:  5'- gUCCAgGGCgCCC-AGGCGGUCgaaaCCAGGc -3'
miRNA:   3'- -AGGUgCCG-GGGcUUCGCUAG----GGUCUu -5'
14630 3' -59.6 NC_003521.1 + 110994 0.66 0.837339
Target:  5'- gCCACGGgCCCCagcagcAGGCGG-CCCAGc- -3'
miRNA:   3'- aGGUGCC-GGGGc-----UUCGCUaGGGUCuu -5'
14630 3' -59.6 NC_003521.1 + 112450 0.71 0.587956
Target:  5'- cCCagGCGGCCCUGGugGGCGcgCCCGGc- -3'
miRNA:   3'- aGG--UGCCGGGGCU--UCGCuaGGGUCuu -5'
14630 3' -59.6 NC_003521.1 + 116724 0.66 0.821318
Target:  5'- uUCCACGGCgguCCCGGAGuCGGcgCCCu--- -3'
miRNA:   3'- -AGGUGCCG---GGGCUUC-GCUa-GGGucuu -5'
14630 3' -59.6 NC_003521.1 + 116809 0.68 0.751554
Target:  5'- gCCGCGaCCCCGAcugggugcugcAGCGGuUUCCAGAc -3'
miRNA:   3'- aGGUGCcGGGGCU-----------UCGCU-AGGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 120552 0.7 0.617165
Target:  5'- cCgGCGGUCCCGggG-GAgcgCCCGGGGa -3'
miRNA:   3'- aGgUGCCGGGGCuuCgCUa--GGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 121206 0.66 0.837339
Target:  5'- cUCCACGGUCUCGcgcaGGGCGcgCagcuCCAGGAa -3'
miRNA:   3'- -AGGUGCCGGGGC----UUCGCuaG----GGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 122152 0.67 0.769727
Target:  5'- -gCACGuGCCCCGAGaUGGggCCCAGGAc -3'
miRNA:   3'- agGUGC-CGGGGCUUcGCUa-GGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 125120 0.66 0.860081
Target:  5'- aCCACGGCCgCCGucagcuuGGCcaguuugCCCAGGu -3'
miRNA:   3'- aGGUGCCGG-GGCu------UCGcua----GGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 144124 0.7 0.60741
Target:  5'- gCCGCGGCCUggaCGAGGUGcgCCUGGGc -3'
miRNA:   3'- aGGUGCCGGG---GCUUCGCuaGGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 144866 0.67 0.813069
Target:  5'- cCCGCGGguCCCCGAAcCGcAUCCguGAGg -3'
miRNA:   3'- aGGUGCC--GGGGCUUcGC-UAGGguCUU- -5'
14630 3' -59.6 NC_003521.1 + 146358 0.66 0.85268
Target:  5'- aCCGC-GCCguacaCGggGCGGUUCCGGGu -3'
miRNA:   3'- aGGUGcCGGg----GCuuCGCUAGGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 147506 0.71 0.559009
Target:  5'- -aCACGGCCCCGAAGCa---CCAGc- -3'
miRNA:   3'- agGUGCCGGGGCUUCGcuagGGUCuu -5'
14630 3' -59.6 NC_003521.1 + 161141 0.68 0.74232
Target:  5'- -aCGCGGCCgCG-GGCGGUCgCGGAc -3'
miRNA:   3'- agGUGCCGGgGCuUCGCUAGgGUCUu -5'
14630 3' -59.6 NC_003521.1 + 163962 0.69 0.685353
Target:  5'- gCCGCGGaCgCCGAagauGGCGGUCgCCGGGc -3'
miRNA:   3'- aGGUGCC-GgGGCU----UCGCUAG-GGUCUu -5'
14630 3' -59.6 NC_003521.1 + 164794 0.66 0.821318
Target:  5'- -gCACgGGUCgUCGggGaCGAUCCCGGAGc -3'
miRNA:   3'- agGUG-CCGG-GGCuuC-GCUAGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 166678 0.69 0.656222
Target:  5'- aCCugGGCCCCGuGGCGcgCCa---- -3'
miRNA:   3'- aGGugCCGGGGCuUCGCuaGGgucuu -5'
14630 3' -59.6 NC_003521.1 + 175120 0.69 0.685353
Target:  5'- gCCGCGGCgCCGcuGUccuucuugccuGGUCCCGGAAg -3'
miRNA:   3'- aGGUGCCGgGGCuuCG-----------CUAGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 178120 0.66 0.845097
Target:  5'- aUCugGGCCUCGGgcagGGCGgGUCCC-GAAg -3'
miRNA:   3'- aGGugCCGGGGCU----UCGC-UAGGGuCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.