miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 3' -59.6 NC_003521.1 + 161141 0.68 0.74232
Target:  5'- -aCGCGGCCgCG-GGCGGUCgCGGAc -3'
miRNA:   3'- agGUGCCGGgGCuUCGCUAGgGUCUu -5'
14630 3' -59.6 NC_003521.1 + 146358 0.66 0.85268
Target:  5'- aCCGC-GCCguacaCGggGCGGUUCCGGGu -3'
miRNA:   3'- aGGUGcCGGg----GCuuCGCUAGGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 3057 0.66 0.837339
Target:  5'- aCCGC--CCCCGAAuucucCGAUCCCGGGAa -3'
miRNA:   3'- aGGUGccGGGGCUUc----GCUAGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 4535 0.68 0.74232
Target:  5'- aCCGCaucGCCCCGAGGCGuugcUCUgAGGAu -3'
miRNA:   3'- aGGUGc--CGGGGCUUCGCu---AGGgUCUU- -5'
14630 3' -59.6 NC_003521.1 + 199998 0.66 0.860081
Target:  5'- gUCCAUGgcgcgggccccGCCCCGAGGCGAauagcugaccgCgCCGGGAg -3'
miRNA:   3'- -AGGUGC-----------CGGGGCUUCGCUa----------G-GGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 209272 0.68 0.723596
Target:  5'- aCCugGGCUUCGccGAGUGGUCgCAGAc -3'
miRNA:   3'- aGGugCCGGGGC--UUCGCUAGgGUCUu -5'
14630 3' -59.6 NC_003521.1 + 84042 0.68 0.723596
Target:  5'- gUCCACGGCCaCCuucucGAGCGAgaggCCCuGGc -3'
miRNA:   3'- -AGGUGCCGG-GGc----UUCGCUa---GGGuCUu -5'
14630 3' -59.6 NC_003521.1 + 203627 0.7 0.6367
Target:  5'- aCCGCGGUCCCccGGCuccuccUCCCAGAAa -3'
miRNA:   3'- aGGUGCCGGGGcuUCGcu----AGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 219199 0.66 0.837339
Target:  5'- cCCA-GGCCCaUGAuGGCGGUCgCCAGGc -3'
miRNA:   3'- aGGUgCCGGG-GCU-UCGCUAG-GGUCUu -5'
14630 3' -59.6 NC_003521.1 + 216865 0.66 0.837339
Target:  5'- uUCCA-GGCCCgUGGAGCGGgacaUCCAGGc -3'
miRNA:   3'- -AGGUgCCGGG-GCUUCGCUa---GGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 210962 0.68 0.751554
Target:  5'- gCCACGGCCUUcu-GCG-UCCCGGGc -3'
miRNA:   3'- aGGUGCCGGGGcuuCGCuAGGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 64769 0.68 0.732998
Target:  5'- -gCGCGGCaCCG-GGCGAUCCCAa-- -3'
miRNA:   3'- agGUGCCGgGGCuUCGCUAGGGUcuu -5'
14630 3' -59.6 NC_003521.1 + 74186 0.69 0.694994
Target:  5'- gCCGCGGCgCCCGgcGCGcggCCCGa-- -3'
miRNA:   3'- aGGUGCCG-GGGCuuCGCua-GGGUcuu -5'
14630 3' -59.6 NC_003521.1 + 186478 0.69 0.694994
Target:  5'- gCCAC-GCCCCG-AGUGG-CCCAGGg -3'
miRNA:   3'- aGGUGcCGGGGCuUCGCUaGGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 144124 0.7 0.60741
Target:  5'- gCCGCGGCCUggaCGAGGUGcgCCUGGGc -3'
miRNA:   3'- aGGUGCCGGG---GCUUCGCuaGGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 101262 0.67 0.813069
Target:  5'- --aGCGGCUCCaGAGGCuggCCCAGAGc -3'
miRNA:   3'- aggUGCCGGGG-CUUCGcuaGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 116724 0.66 0.821318
Target:  5'- uUCCACGGCgguCCCGGAGuCGGcgCCCu--- -3'
miRNA:   3'- -AGGUGCCG---GGGCUUC-GCUa-GGGucuu -5'
14630 3' -59.6 NC_003521.1 + 164794 0.66 0.821318
Target:  5'- -gCACgGGUCgUCGggGaCGAUCCCGGAGc -3'
miRNA:   3'- agGUG-CCGG-GGCuuC-GCUAGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 194878 0.66 0.821318
Target:  5'- cUCCACGGCCCucuuCGAccGCGAgaucgCCUGGGc -3'
miRNA:   3'- -AGGUGCCGGG----GCUu-CGCUa----GGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 121206 0.66 0.837339
Target:  5'- cUCCACGGUCUCGcgcaGGGCGcgCagcuCCAGGAa -3'
miRNA:   3'- -AGGUGCCGGGGC----UUCGCuaG----GGUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.