miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 5' -57.2 NC_003521.1 + 156623 0.68 0.866193
Target:  5'- cCUgGUGCuGcGCGACGCCCuGGGCuUCc -3'
miRNA:   3'- aGAgUACGcC-UGUUGCGGG-CCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 164434 0.66 0.928066
Target:  5'- -aUCGgcaagGUGGAgGGCGCCgCGGGCc-- -3'
miRNA:   3'- agAGUa----CGCCUgUUGCGG-GCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 164589 0.7 0.766966
Target:  5'- cCUCAcGCucgaGGACGugcGCGCCCaGGGCGUg -3'
miRNA:   3'- aGAGUaCG----CCUGU---UGCGGG-CCCGUAg -5'
14630 5' -57.2 NC_003521.1 + 164829 0.72 0.622071
Target:  5'- uUCUaCGUGCuGACGGCGCCCggcgaGGGCcgCu -3'
miRNA:   3'- -AGA-GUACGcCUGUUGCGGG-----CCCGuaG- -5'
14630 5' -57.2 NC_003521.1 + 166704 0.66 0.922862
Target:  5'- -gUCcUGC--ACGGCGCCCauGGGCGUCg -3'
miRNA:   3'- agAGuACGccUGUUGCGGG--CCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 169436 0.67 0.886999
Target:  5'- gCUCAcGCGGACGACGgCgucggcggcggCGGGUucGUCg -3'
miRNA:   3'- aGAGUaCGCCUGUUGCgG-----------GCCCG--UAG- -5'
14630 5' -57.2 NC_003521.1 + 170864 0.66 0.917436
Target:  5'- uUCUCcgcggggGCGGGCGcggguggucagGCGUCCG-GCGUCg -3'
miRNA:   3'- -AGAGua-----CGCCUGU-----------UGCGGGCcCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 173038 0.66 0.917436
Target:  5'- gCUCGccgGUGGGCAGCuggGUCUGGGUGUUg -3'
miRNA:   3'- aGAGUa--CGCCUGUUG---CGGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 174088 0.66 0.928066
Target:  5'- gUC-CAgucGCGGcACGAUGgCCGGGCAc- -3'
miRNA:   3'- -AGaGUa--CGCC-UGUUGCgGGCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 177731 0.7 0.729644
Target:  5'- gCUgGaggGCGGGCAGCGCgCCGGcGCAg- -3'
miRNA:   3'- aGAgUa--CGCCUGUUGCG-GGCC-CGUag -5'
14630 5' -57.2 NC_003521.1 + 178785 0.69 0.82766
Target:  5'- gUCUCGuuguUGCaGGACgGGCcCCCGGGCAccUCg -3'
miRNA:   3'- -AGAGU----ACG-CCUG-UUGcGGGCCCGU--AG- -5'
14630 5' -57.2 NC_003521.1 + 182169 0.69 0.82766
Target:  5'- aCUCGUGaCGGACGgccgGCGCgUGGGgAUUc -3'
miRNA:   3'- aGAGUAC-GCCUGU----UGCGgGCCCgUAG- -5'
14630 5' -57.2 NC_003521.1 + 183012 0.66 0.917436
Target:  5'- cUUCAUGCGG-CAGC---UGGGCGUCg -3'
miRNA:   3'- aGAGUACGCCuGUUGcggGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 184021 0.66 0.928066
Target:  5'- aCUCGUucGCGcGCGACGCCgguUGGGCGg- -3'
miRNA:   3'- aGAGUA--CGCcUGUUGCGG---GCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 194156 0.7 0.748496
Target:  5'- cCUCG-GCGGGCGGuuccauCGCCCGGGUu-- -3'
miRNA:   3'- aGAGUaCGCCUGUU------GCGGGCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 194724 0.67 0.892877
Target:  5'- gUC-CGgagGCGGcgcuacaaggucuGCGACG-CCGGGCGUCg -3'
miRNA:   3'- -AGaGUa--CGCC-------------UGUUGCgGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 195746 0.66 0.937803
Target:  5'- aUCgggCAcGCGGAaGAUGUCCGGGUuUCc -3'
miRNA:   3'- -AGa--GUaCGCCUgUUGCGGGCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 195846 0.69 0.819429
Target:  5'- aUCUCGcGCGG-CAGgGUUCGGGgAUCg -3'
miRNA:   3'- -AGAGUaCGCCuGUUgCGGGCCCgUAG- -5'
14630 5' -57.2 NC_003521.1 + 197660 0.7 0.766966
Target:  5'- gCUCGUGCGGcaGCAGCGCCaccaGcGCGUg -3'
miRNA:   3'- aGAGUACGCC--UGUUGCGGg---CcCGUAg -5'
14630 5' -57.2 NC_003521.1 + 198261 0.72 0.671461
Target:  5'- aCUCGgccGcCGGACAGCcagCCGGGCGUCg -3'
miRNA:   3'- aGAGUa--C-GCCUGUUGcg-GGCCCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.