Results 41 - 60 of 90 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 119613 | 0.72 | 0.631963 |
Target: 5'- gUCUCGUGCugcaGGugGACguuuacccacugGCCgCGGGCGUCc -3' miRNA: 3'- -AGAGUACG----CCugUUG------------CGG-GCCCGUAG- -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 120543 | 0.66 | 0.931575 |
Target: 5'- cCUCG-GCGGcCGgcggucccgggggaGCGCCCGGGgAUa -3' miRNA: 3'- aGAGUaCGCCuGU--------------UGCGGGCCCgUAg -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 120964 | 0.67 | 0.880268 |
Target: 5'- ----cUGCGGAcCGAgGCCCGGGUg-- -3' miRNA: 3'- agaguACGCCU-GUUgCGGGCCCGuag -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 122103 | 0.67 | 0.905916 |
Target: 5'- gUCUCGUGCGGcugcaGCGGCGUcucgCCGcGGCu-- -3' miRNA: 3'- -AGAGUACGCC-----UGUUGCG----GGC-CCGuag -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 122732 | 0.66 | 0.930085 |
Target: 5'- -gUCGUGgGcGACGGCGCcgccgauggcugacaCCGGGCAc- -3' miRNA: 3'- agAGUACgC-CUGUUGCG---------------GGCCCGUag -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 122962 | 0.66 | 0.922862 |
Target: 5'- --aCGUGCGGGguagcCAGacCGUCaCGGGCAUCu -3' miRNA: 3'- agaGUACGCCU-----GUU--GCGG-GCCCGUAG- -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 127425 | 0.67 | 0.905916 |
Target: 5'- aCUCAaaguUGCGcACc-CGCCCGcGGCGUCc -3' miRNA: 3'- aGAGU----ACGCcUGuuGCGGGC-CCGUAG- -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 128455 | 0.66 | 0.933046 |
Target: 5'- gCUCGcccagGCGGAUcACGUCCauGGGCAg- -3' miRNA: 3'- aGAGUa----CGCCUGuUGCGGG--CCCGUag -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 130223 | 0.67 | 0.899826 |
Target: 5'- cCUCAUGgUGGAgAucggccGCGUgCUGGGCGUCa -3' miRNA: 3'- aGAGUAC-GCCUgU------UGCG-GGCCCGUAG- -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 135042 | 0.67 | 0.89352 |
Target: 5'- -gUCAcgGUGGuuAACGCCuCGGGCAc- -3' miRNA: 3'- agAGUa-CGCCugUUGCGG-GCCCGUag -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 135925 | 0.67 | 0.899826 |
Target: 5'- cCUCGgccacggccGCGGgauguGCGACGCCuCGGGCGc- -3' miRNA: 3'- aGAGUa--------CGCC-----UGUUGCGG-GCCCGUag -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 138332 | 0.66 | 0.933046 |
Target: 5'- cCUgCGgcUGCGcGACGGCGUCuCGGGCcUCu -3' miRNA: 3'- aGA-GU--ACGC-CUGUUGCGG-GCCCGuAG- -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 141302 | 0.7 | 0.739113 |
Target: 5'- gCagGUGCGGGCGGCGCcCCGGaGCc-- -3' miRNA: 3'- aGagUACGCCUGUUGCG-GGCC-CGuag -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 144104 | 0.7 | 0.746627 |
Target: 5'- cCUCAUGCGGcugcuggaccgccGCGgccuggacgagguGCGCCUGGGC-UCc -3' miRNA: 3'- aGAGUACGCC-------------UGU-------------UGCGGGCCCGuAG- -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 145276 | 0.67 | 0.899826 |
Target: 5'- cCUCG-GCGGcCAgcucGCGCgccggcgucucgCCGGGCAUCc -3' miRNA: 3'- aGAGUaCGCCuGU----UGCG------------GGCCCGUAG- -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 150431 | 0.67 | 0.89352 |
Target: 5'- gUCgCGUGCaGGAgAgcGCGCCCGGG-GUCc -3' miRNA: 3'- -AGaGUACG-CCUgU--UGCGGGCCCgUAG- -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 150669 | 0.66 | 0.937803 |
Target: 5'- cUCUCcgGCGG-CGGCGCCgcugcugcUGGGUg-- -3' miRNA: 3'- -AGAGuaCGCCuGUUGCGG--------GCCCGuag -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 150723 | 0.67 | 0.905916 |
Target: 5'- cUCUCGgccGUGGGCcACGuCCUGGGCc-- -3' miRNA: 3'- -AGAGUa--CGCCUGuUGC-GGGCCCGuag -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 152752 | 0.66 | 0.911786 |
Target: 5'- cCUCca-CGGGCAGCGCgCGgaacGGCGUCg -3' miRNA: 3'- aGAGuacGCCUGUUGCGgGC----CCGUAG- -5' |
|||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 155277 | 0.7 | 0.766966 |
Target: 5'- cCUCAggcccgucGCuGGGCAACGCCaUGGGCuUCg -3' miRNA: 3'- aGAGUa-------CG-CCUGUUGCGG-GCCCGuAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home