Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 100240 | 0.68 | 0.85133 |
Target: 5'- gUCUCGccgGCcgcgaaauccucGGGCGGCGCCUGGGUg-- -3' miRNA: 3'- -AGAGUa--CG------------CCUGUUGCGGGCCCGuag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 16602 | 0.68 | 0.858858 |
Target: 5'- ---gGUGUGGACcGCGacuaCGGGCGUCa -3' miRNA: 3'- agagUACGCCUGuUGCgg--GCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 114174 | 0.68 | 0.858858 |
Target: 5'- aCUCGgaccCGGugAucgGCUCGGGCAUCa -3' miRNA: 3'- aGAGUac--GCCugUug-CGGGCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 62411 | 0.68 | 0.858858 |
Target: 5'- cCUCG-GCGGcuacCAGUGUCUGGGCAUCu -3' miRNA: 3'- aGAGUaCGCCu---GUUGCGGGCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 216288 | 0.68 | 0.858858 |
Target: 5'- gCUCGUggaGCGGACGACGUUggCGGGgGUg -3' miRNA: 3'- aGAGUA---CGCCUGUUGCGG--GCCCgUAg -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 156623 | 0.68 | 0.866193 |
Target: 5'- cCUgGUGCuGcGCGACGCCCuGGGCuUCc -3' miRNA: 3'- aGAgUACGcC-UGUUGCGGG-CCCGuAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 37388 | 0.68 | 0.866193 |
Target: 5'- gUUCGagGCGGcgGgGGCGCCCGGGCcUUg -3' miRNA: 3'- aGAGUa-CGCC--UgUUGCGGGCCCGuAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 119032 | 0.68 | 0.873332 |
Target: 5'- aUUCGgauaggGCGGGCGGCGUCgGGGUg-- -3' miRNA: 3'- aGAGUa-----CGCCUGUUGCGGgCCCGuag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 73706 | 0.67 | 0.880268 |
Target: 5'- cUUCGUGgaGcGCAGCGaCCCGGGCcgCg -3' miRNA: 3'- aGAGUACg-CcUGUUGC-GGGCCCGuaG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 22632 | 0.67 | 0.880268 |
Target: 5'- gCUCAU-CGGcACcugcuACGCCUGGGuCGUCg -3' miRNA: 3'- aGAGUAcGCC-UGu----UGCGGGCCC-GUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 120964 | 0.67 | 0.880268 |
Target: 5'- ----cUGCGGAcCGAgGCCCGGGUg-- -3' miRNA: 3'- agaguACGCCU-GUUgCGGGCCCGuag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 31618 | 0.67 | 0.882986 |
Target: 5'- -gUCAggugGCGGAUggccgguagguggaaAGCGCCCaGGUGUCg -3' miRNA: 3'- agAGUa---CGCCUG---------------UUGCGGGcCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 16485 | 0.67 | 0.886336 |
Target: 5'- gUCUaCGUGCGG-CGACGCUacgagcaCGGGCu-- -3' miRNA: 3'- -AGA-GUACGCCuGUUGCGG-------GCCCGuag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 89249 | 0.67 | 0.886999 |
Target: 5'- aUCgggCGUGCuGACGcggugacacgagACGCCCGcGCGUCa -3' miRNA: 3'- -AGa--GUACGcCUGU------------UGCGGGCcCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 169436 | 0.67 | 0.886999 |
Target: 5'- gCUCAcGCGGACGACGgCgucggcggcggCGGGUucGUCg -3' miRNA: 3'- aGAGUaCGCCUGUUGCgG-----------GCCCG--UAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 194724 | 0.67 | 0.892877 |
Target: 5'- gUC-CGgagGCGGcgcuacaaggucuGCGACG-CCGGGCGUCg -3' miRNA: 3'- -AGaGUa--CGCC-------------UGUUGCgGGCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 21722 | 0.67 | 0.89352 |
Target: 5'- gCUCAUGUGGcuggugACGAUGCCCGaacaGGUcUCg -3' miRNA: 3'- aGAGUACGCC------UGUUGCGGGC----CCGuAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 46065 | 0.67 | 0.89352 |
Target: 5'- --cCggGCGGgaugaggucGCGACGCCCG-GCGUCg -3' miRNA: 3'- agaGuaCGCC---------UGUUGCGGGCcCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 150431 | 0.67 | 0.89352 |
Target: 5'- gUCgCGUGCaGGAgAgcGCGCCCGGG-GUCc -3' miRNA: 3'- -AGaGUACG-CCUgU--UGCGGGCCCgUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 135042 | 0.67 | 0.89352 |
Target: 5'- -gUCAcgGUGGuuAACGCCuCGGGCAc- -3' miRNA: 3'- agAGUa-CGCCugUUGCGG-GCCCGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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