Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 22632 | 0.67 | 0.880268 |
Target: 5'- gCUCAU-CGGcACcugcuACGCCUGGGuCGUCg -3' miRNA: 3'- aGAGUAcGCC-UGu----UGCGGGCCC-GUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 73706 | 0.67 | 0.880268 |
Target: 5'- cUUCGUGgaGcGCAGCGaCCCGGGCcgCg -3' miRNA: 3'- aGAGUACg-CcUGUUGC-GGGCCCGuaG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 119032 | 0.68 | 0.873332 |
Target: 5'- aUUCGgauaggGCGGGCGGCGUCgGGGUg-- -3' miRNA: 3'- aGAGUa-----CGCCUGUUGCGGgCCCGuag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 37388 | 0.68 | 0.866193 |
Target: 5'- gUUCGagGCGGcgGgGGCGCCCGGGCcUUg -3' miRNA: 3'- aGAGUa-CGCC--UgUUGCGGGCCCGuAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 156623 | 0.68 | 0.866193 |
Target: 5'- cCUgGUGCuGcGCGACGCCCuGGGCuUCc -3' miRNA: 3'- aGAgUACGcC-UGUUGCGGG-CCCGuAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 114174 | 0.68 | 0.858858 |
Target: 5'- aCUCGgaccCGGugAucgGCUCGGGCAUCa -3' miRNA: 3'- aGAGUac--GCCugUug-CGGGCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 216288 | 0.68 | 0.858858 |
Target: 5'- gCUCGUggaGCGGACGACGUUggCGGGgGUg -3' miRNA: 3'- aGAGUA---CGCCUGUUGCGG--GCCCgUAg -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 62411 | 0.68 | 0.858858 |
Target: 5'- cCUCG-GCGGcuacCAGUGUCUGGGCAUCu -3' miRNA: 3'- aGAGUaCGCCu---GUUGCGGGCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 16602 | 0.68 | 0.858858 |
Target: 5'- ---gGUGUGGACcGCGacuaCGGGCGUCa -3' miRNA: 3'- agagUACGCCUGuUGCgg--GCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 100240 | 0.68 | 0.85133 |
Target: 5'- gUCUCGccgGCcgcgaaauccucGGGCGGCGCCUGGGUg-- -3' miRNA: 3'- -AGAGUa--CG------------CCUGUUGCGGGCCCGuag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 15741 | 0.68 | 0.85133 |
Target: 5'- gUUCcUGCaGGu--GCGCCCGGGCAg- -3' miRNA: 3'- aGAGuACG-CCuguUGCGGGCCCGUag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 61978 | 0.68 | 0.843618 |
Target: 5'- gUCUCG-GUGGACcaAGCGCagCGGGaCAUCu -3' miRNA: 3'- -AGAGUaCGCCUG--UUGCGg-GCCC-GUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 4435 | 0.68 | 0.835726 |
Target: 5'- aCUCc--CGGAgAACGCCCGaGGCgAUCu -3' miRNA: 3'- aGAGuacGCCUgUUGCGGGC-CCG-UAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 30689 | 0.68 | 0.835726 |
Target: 5'- cCUCAUGaGGcuuauaacaacGCGGCGCCgCGGGC-UCa -3' miRNA: 3'- aGAGUACgCC-----------UGUUGCGG-GCCCGuAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 74216 | 0.68 | 0.833324 |
Target: 5'- gUCUUcUGCcacguccugcgacaGGugGGCGUCaCGGGCAUCu -3' miRNA: 3'- -AGAGuACG--------------CCugUUGCGG-GCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 178785 | 0.69 | 0.82766 |
Target: 5'- gUCUCGuuguUGCaGGACgGGCcCCCGGGCAccUCg -3' miRNA: 3'- -AGAGU----ACG-CCUG-UUGcGGGCCCGU--AG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 182169 | 0.69 | 0.82766 |
Target: 5'- aCUCGUGaCGGACGgccgGCGCgUGGGgAUUc -3' miRNA: 3'- aGAGUAC-GCCUGU----UGCGgGCCCgUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 34283 | 0.69 | 0.82766 |
Target: 5'- -gUCAcGgGGGCGG-GCCaCGGGCGUCa -3' miRNA: 3'- agAGUaCgCCUGUUgCGG-GCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 12548 | 0.69 | 0.825208 |
Target: 5'- --cCGUGgaGGACGccgagcgucuggagAUGCCCGGGCGUUg -3' miRNA: 3'- agaGUACg-CCUGU--------------UGCGGGCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 224798 | 0.69 | 0.819429 |
Target: 5'- -gUCGUGCGGgacgcGCGugGCguaGGGCGUCu -3' miRNA: 3'- agAGUACGCC-----UGUugCGgg-CCCGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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