miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 5' -57.2 NC_003521.1 + 224081 0.69 0.819429
Target:  5'- cCUCcgGCGGGCGcgcGCGCCgGcGGUcgCc -3'
miRNA:   3'- aGAGuaCGCCUGU---UGCGGgC-CCGuaG- -5'
14630 5' -57.2 NC_003521.1 + 195846 0.69 0.819429
Target:  5'- aUCUCGcGCGG-CAGgGUUCGGGgAUCg -3'
miRNA:   3'- -AGAGUaCGCCuGUUgCGGGCCCgUAG- -5'
14630 5' -57.2 NC_003521.1 + 224798 0.69 0.819429
Target:  5'- -gUCGUGCGGgacgcGCGugGCguaGGGCGUCu -3'
miRNA:   3'- agAGUACGCC-----UGUugCGgg-CCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 96795 0.69 0.802497
Target:  5'- -----aGCGG-CGGCGCUCGGGCAcgaUCg -3'
miRNA:   3'- agaguaCGCCuGUUGCGGGCCCGU---AG- -5'
14630 5' -57.2 NC_003521.1 + 99504 0.69 0.802497
Target:  5'- aCUCGUGCcgcuGGAgGGCGCCCaGG-AUCa -3'
miRNA:   3'- aGAGUACG----CCUgUUGCGGGcCCgUAG- -5'
14630 5' -57.2 NC_003521.1 + 112984 0.69 0.802497
Target:  5'- gCUCAgcgGCGGGCGccACuaccaCCCGGGCAccuUCg -3'
miRNA:   3'- aGAGUa--CGCCUGU--UGc----GGGCCCGU---AG- -5'
14630 5' -57.2 NC_003521.1 + 223204 0.69 0.792934
Target:  5'- cCUCccaGCGGguucguauacgccGCGACGCCUGGcGCGUCc -3'
miRNA:   3'- aGAGua-CGCC-------------UGUUGCGGGCC-CGUAG- -5'
14630 5' -57.2 NC_003521.1 + 13866 0.69 0.791178
Target:  5'- gUCUC-UGCGGGCGGCGCcgccauggauuucgCCGGGgGg- -3'
miRNA:   3'- -AGAGuACGCCUGUUGCG--------------GGCCCgUag -5'
14630 5' -57.2 NC_003521.1 + 218199 0.69 0.784988
Target:  5'- -aUgGUGCGGugGGUGuCCCGGGCAa- -3'
miRNA:   3'- agAgUACGCCugUUGC-GGGCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 155277 0.7 0.766966
Target:  5'- cCUCAggcccgucGCuGGGCAACGCCaUGGGCuUCg -3'
miRNA:   3'- aGAGUa-------CG-CCUGUUGCGG-GCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 164589 0.7 0.766966
Target:  5'- cCUCAcGCucgaGGACGugcGCGCCCaGGGCGUg -3'
miRNA:   3'- aGAGUaCG----CCUGU---UGCGGG-CCCGUAg -5'
14630 5' -57.2 NC_003521.1 + 197660 0.7 0.766966
Target:  5'- gCUCGUGCGGcaGCAGCGCCaccaGcGCGUg -3'
miRNA:   3'- aGAGUACGCC--UGUUGCGGg---CcCGUAg -5'
14630 5' -57.2 NC_003521.1 + 224678 0.7 0.757783
Target:  5'- cUUCA-GCGucuuGGCGugGCGCCCGGGCGUg -3'
miRNA:   3'- aGAGUaCGC----CUGU--UGCGGGCCCGUAg -5'
14630 5' -57.2 NC_003521.1 + 194156 0.7 0.748496
Target:  5'- cCUCG-GCGGGCGGuuccauCGCCCGGGUu-- -3'
miRNA:   3'- aGAGUaCGCCUGUU------GCGGGCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 144104 0.7 0.746627
Target:  5'- cCUCAUGCGGcugcuggaccgccGCGgccuggacgagguGCGCCUGGGC-UCc -3'
miRNA:   3'- aGAGUACGCC-------------UGU-------------UGCGGGCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 141302 0.7 0.739113
Target:  5'- gCagGUGCGGGCGGCGCcCCGGaGCc-- -3'
miRNA:   3'- aGagUACGCCUGUUGCG-GGCC-CGuag -5'
14630 5' -57.2 NC_003521.1 + 177731 0.7 0.729644
Target:  5'- gCUgGaggGCGGGCAGCGCgCCGGcGCAg- -3'
miRNA:   3'- aGAgUa--CGCCUGUUGCG-GGCC-CGUag -5'
14630 5' -57.2 NC_003521.1 + 12237 0.71 0.720095
Target:  5'- gCUC-UGCGGGC-ACGCCgacaaccucaaGGGCGUCu -3'
miRNA:   3'- aGAGuACGCCUGuUGCGGg----------CCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 72576 0.71 0.710476
Target:  5'- cCUCGUGCGG-CAACGCguuCCaGGCGcUCa -3'
miRNA:   3'- aGAGUACGCCuGUUGCG---GGcCCGU-AG- -5'
14630 5' -57.2 NC_003521.1 + 202062 0.71 0.709511
Target:  5'- cCUCAgcaugGCGGACGACagaccgggacgggGCCCGGcGCcUCu -3'
miRNA:   3'- aGAGUa----CGCCUGUUG-------------CGGGCC-CGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.