miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 5' -57.2 NC_003521.1 + 173038 0.66 0.917436
Target:  5'- gCUCGccgGUGGGCAGCuggGUCUGGGUGUUg -3'
miRNA:   3'- aGAGUa--CGCCUGUUG---CGGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 83682 0.66 0.911786
Target:  5'- cCUCGcgcgugacguUGUGGAC-GCGCgagCGGGCGUCc -3'
miRNA:   3'- aGAGU----------ACGCCUGuUGCGg--GCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 152752 0.66 0.911786
Target:  5'- cCUCca-CGGGCAGCGCgCGgaacGGCGUCg -3'
miRNA:   3'- aGAGuacGCCUGUUGCGgGC----CCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 122103 0.67 0.905916
Target:  5'- gUCUCGUGCGGcugcaGCGGCGUcucgCCGcGGCu-- -3'
miRNA:   3'- -AGAGUACGCC-----UGUUGCG----GGC-CCGuag -5'
14630 5' -57.2 NC_003521.1 + 150723 0.67 0.905916
Target:  5'- cUCUCGgccGUGGGCcACGuCCUGGGCc-- -3'
miRNA:   3'- -AGAGUa--CGCCUGuUGC-GGGCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 127425 0.67 0.905916
Target:  5'- aCUCAaaguUGCGcACc-CGCCCGcGGCGUCc -3'
miRNA:   3'- aGAGU----ACGCcUGuuGCGGGC-CCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 135925 0.67 0.899826
Target:  5'- cCUCGgccacggccGCGGgauguGCGACGCCuCGGGCGc- -3'
miRNA:   3'- aGAGUa--------CGCC-----UGUUGCGG-GCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 130223 0.67 0.899826
Target:  5'- cCUCAUGgUGGAgAucggccGCGUgCUGGGCGUCa -3'
miRNA:   3'- aGAGUAC-GCCUgU------UGCG-GGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 145276 0.67 0.899826
Target:  5'- cCUCG-GCGGcCAgcucGCGCgccggcgucucgCCGGGCAUCc -3'
miRNA:   3'- aGAGUaCGCCuGU----UGCG------------GGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 47987 0.67 0.899826
Target:  5'- uUCUCGUccaCGGAC-GCGCCgcCGGGCuUCu -3'
miRNA:   3'- -AGAGUAc--GCCUGuUGCGG--GCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 46065 0.67 0.89352
Target:  5'- --cCggGCGGgaugaggucGCGACGCCCG-GCGUCg -3'
miRNA:   3'- agaGuaCGCC---------UGUUGCGGGCcCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 150431 0.67 0.89352
Target:  5'- gUCgCGUGCaGGAgAgcGCGCCCGGG-GUCc -3'
miRNA:   3'- -AGaGUACG-CCUgU--UGCGGGCCCgUAG- -5'
14630 5' -57.2 NC_003521.1 + 135042 0.67 0.89352
Target:  5'- -gUCAcgGUGGuuAACGCCuCGGGCAc- -3'
miRNA:   3'- agAGUa-CGCCugUUGCGG-GCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 21722 0.67 0.89352
Target:  5'- gCUCAUGUGGcuggugACGAUGCCCGaacaGGUcUCg -3'
miRNA:   3'- aGAGUACGCC------UGUUGCGGGC----CCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 194724 0.67 0.892877
Target:  5'- gUC-CGgagGCGGcgcuacaaggucuGCGACG-CCGGGCGUCg -3'
miRNA:   3'- -AGaGUa--CGCC-------------UGUUGCgGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 89249 0.67 0.886999
Target:  5'- aUCgggCGUGCuGACGcggugacacgagACGCCCGcGCGUCa -3'
miRNA:   3'- -AGa--GUACGcCUGU------------UGCGGGCcCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 169436 0.67 0.886999
Target:  5'- gCUCAcGCGGACGACGgCgucggcggcggCGGGUucGUCg -3'
miRNA:   3'- aGAGUaCGCCUGUUGCgG-----------GCCCG--UAG- -5'
14630 5' -57.2 NC_003521.1 + 16485 0.67 0.886336
Target:  5'- gUCUaCGUGCGG-CGACGCUacgagcaCGGGCu-- -3'
miRNA:   3'- -AGA-GUACGCCuGUUGCGG-------GCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 31618 0.67 0.882986
Target:  5'- -gUCAggugGCGGAUggccgguagguggaaAGCGCCCaGGUGUCg -3'
miRNA:   3'- agAGUa---CGCCUG---------------UUGCGGGcCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 22632 0.67 0.880268
Target:  5'- gCUCAU-CGGcACcugcuACGCCUGGGuCGUCg -3'
miRNA:   3'- aGAGUAcGCC-UGu----UGCGGGCCC-GUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.