miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 5' -57.2 NC_003521.1 + 61978 0.68 0.843618
Target:  5'- gUCUCG-GUGGACcaAGCGCagCGGGaCAUCu -3'
miRNA:   3'- -AGAGUaCGCCUG--UUGCGg-GCCC-GUAG- -5'
14630 5' -57.2 NC_003521.1 + 62411 0.68 0.858858
Target:  5'- cCUCG-GCGGcuacCAGUGUCUGGGCAUCu -3'
miRNA:   3'- aGAGUaCGCCu---GUUGCGGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 72576 0.71 0.710476
Target:  5'- cCUCGUGCGG-CAACGCguuCCaGGCGcUCa -3'
miRNA:   3'- aGAGUACGCCuGUUGCG---GGcCCGU-AG- -5'
14630 5' -57.2 NC_003521.1 + 73706 0.67 0.880268
Target:  5'- cUUCGUGgaGcGCAGCGaCCCGGGCcgCg -3'
miRNA:   3'- aGAGUACg-CcUGUUGC-GGGCCCGuaG- -5'
14630 5' -57.2 NC_003521.1 + 74216 0.68 0.833324
Target:  5'- gUCUUcUGCcacguccugcgacaGGugGGCGUCaCGGGCAUCu -3'
miRNA:   3'- -AGAGuACG--------------CCugUUGCGG-GCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 77736 0.66 0.917436
Target:  5'- cCUCG-GUGGGCGGCGUCUGGuaGUg -3'
miRNA:   3'- aGAGUaCGCCUGUUGCGGGCCcgUAg -5'
14630 5' -57.2 NC_003521.1 + 83682 0.66 0.911786
Target:  5'- cCUCGcgcgugacguUGUGGAC-GCGCgagCGGGCGUCc -3'
miRNA:   3'- aGAGU----------ACGCCUGuUGCGg--GCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 89249 0.67 0.886999
Target:  5'- aUCgggCGUGCuGACGcggugacacgagACGCCCGcGCGUCa -3'
miRNA:   3'- -AGa--GUACGcCUGU------------UGCGGGCcCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 91916 0.66 0.933046
Target:  5'- gCUCgAUGcCGcGGCGGCGCUCcucGGCGUCg -3'
miRNA:   3'- aGAG-UAC-GC-CUGUUGCGGGc--CCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 94862 0.66 0.922862
Target:  5'- gCUCAUagauguugagGCGGccCAGCaGCUCGGGCGUg -3'
miRNA:   3'- aGAGUA----------CGCCu-GUUG-CGGGCCCGUAg -5'
14630 5' -57.2 NC_003521.1 + 96795 0.69 0.802497
Target:  5'- -----aGCGG-CGGCGCUCGGGCAcgaUCg -3'
miRNA:   3'- agaguaCGCCuGUUGCGGGCCCGU---AG- -5'
14630 5' -57.2 NC_003521.1 + 99504 0.69 0.802497
Target:  5'- aCUCGUGCcgcuGGAgGGCGCCCaGG-AUCa -3'
miRNA:   3'- aGAGUACG----CCUgUUGCGGGcCCgUAG- -5'
14630 5' -57.2 NC_003521.1 + 100240 0.68 0.85133
Target:  5'- gUCUCGccgGCcgcgaaauccucGGGCGGCGCCUGGGUg-- -3'
miRNA:   3'- -AGAGUa--CG------------CCUGUUGCGGGCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 102947 0.72 0.622071
Target:  5'- --gCGUcGCGGuccaGGCGCUCGGGCGUCg -3'
miRNA:   3'- agaGUA-CGCCug--UUGCGGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 104846 0.74 0.518906
Target:  5'- cCUCGgugaaggcguUGUGGACGugccucaugucgcagGCGCCCGaGGCGUCg -3'
miRNA:   3'- aGAGU----------ACGCCUGU---------------UGCGGGC-CCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 112984 0.69 0.802497
Target:  5'- gCUCAgcgGCGGGCGccACuaccaCCCGGGCAccuUCg -3'
miRNA:   3'- aGAGUa--CGCCUGU--UGc----GGGCCCGU---AG- -5'
14630 5' -57.2 NC_003521.1 + 113548 0.72 0.671461
Target:  5'- --gCGUGuCGGACGugccGCGCCUGGGCGc- -3'
miRNA:   3'- agaGUAC-GCCUGU----UGCGGGCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 114174 0.68 0.858858
Target:  5'- aCUCGgaccCGGugAucgGCUCGGGCAUCa -3'
miRNA:   3'- aGAGUac--GCCugUug-CGGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 115646 0.69 0.819429
Target:  5'- gCUCGUGCGuGuCGGCGCCCcaguGGCGg- -3'
miRNA:   3'- aGAGUACGC-CuGUUGCGGGc---CCGUag -5'
14630 5' -57.2 NC_003521.1 + 119032 0.68 0.873332
Target:  5'- aUUCGgauaggGCGGGCGGCGUCgGGGUg-- -3'
miRNA:   3'- aGAGUa-----CGCCUGUUGCGGgCCCGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.