miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 5' -57.2 NC_003521.1 + 177731 0.7 0.729644
Target:  5'- gCUgGaggGCGGGCAGCGCgCCGGcGCAg- -3'
miRNA:   3'- aGAgUa--CGCCUGUUGCG-GGCC-CGUag -5'
14630 5' -57.2 NC_003521.1 + 174088 0.66 0.928066
Target:  5'- gUC-CAgucGCGGcACGAUGgCCGGGCAc- -3'
miRNA:   3'- -AGaGUa--CGCC-UGUUGCgGGCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 173038 0.66 0.917436
Target:  5'- gCUCGccgGUGGGCAGCuggGUCUGGGUGUUg -3'
miRNA:   3'- aGAGUa--CGCCUGUUG---CGGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 170864 0.66 0.917436
Target:  5'- uUCUCcgcggggGCGGGCGcggguggucagGCGUCCG-GCGUCg -3'
miRNA:   3'- -AGAGua-----CGCCUGU-----------UGCGGGCcCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 169436 0.67 0.886999
Target:  5'- gCUCAcGCGGACGACGgCgucggcggcggCGGGUucGUCg -3'
miRNA:   3'- aGAGUaCGCCUGUUGCgG-----------GCCCG--UAG- -5'
14630 5' -57.2 NC_003521.1 + 166704 0.66 0.922862
Target:  5'- -gUCcUGC--ACGGCGCCCauGGGCGUCg -3'
miRNA:   3'- agAGuACGccUGUUGCGGG--CCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 164829 0.72 0.622071
Target:  5'- uUCUaCGUGCuGACGGCGCCCggcgaGGGCcgCu -3'
miRNA:   3'- -AGA-GUACGcCUGUUGCGGG-----CCCGuaG- -5'
14630 5' -57.2 NC_003521.1 + 164589 0.7 0.766966
Target:  5'- cCUCAcGCucgaGGACGugcGCGCCCaGGGCGUg -3'
miRNA:   3'- aGAGUaCG----CCUGU---UGCGGG-CCCGUAg -5'
14630 5' -57.2 NC_003521.1 + 164434 0.66 0.928066
Target:  5'- -aUCGgcaagGUGGAgGGCGCCgCGGGCc-- -3'
miRNA:   3'- agAGUa----CGCCUgUUGCGG-GCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 156623 0.68 0.866193
Target:  5'- cCUgGUGCuGcGCGACGCCCuGGGCuUCc -3'
miRNA:   3'- aGAgUACGcC-UGUUGCGGG-CCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 155277 0.7 0.766966
Target:  5'- cCUCAggcccgucGCuGGGCAACGCCaUGGGCuUCg -3'
miRNA:   3'- aGAGUa-------CG-CCUGUUGCGG-GCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 152752 0.66 0.911786
Target:  5'- cCUCca-CGGGCAGCGCgCGgaacGGCGUCg -3'
miRNA:   3'- aGAGuacGCCUGUUGCGgGC----CCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 150723 0.67 0.905916
Target:  5'- cUCUCGgccGUGGGCcACGuCCUGGGCc-- -3'
miRNA:   3'- -AGAGUa--CGCCUGuUGC-GGGCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 150669 0.66 0.937803
Target:  5'- cUCUCcgGCGG-CGGCGCCgcugcugcUGGGUg-- -3'
miRNA:   3'- -AGAGuaCGCCuGUUGCGG--------GCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 150431 0.67 0.89352
Target:  5'- gUCgCGUGCaGGAgAgcGCGCCCGGG-GUCc -3'
miRNA:   3'- -AGaGUACG-CCUgU--UGCGGGCCCgUAG- -5'
14630 5' -57.2 NC_003521.1 + 145276 0.67 0.899826
Target:  5'- cCUCG-GCGGcCAgcucGCGCgccggcgucucgCCGGGCAUCc -3'
miRNA:   3'- aGAGUaCGCCuGU----UGCG------------GGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 144104 0.7 0.746627
Target:  5'- cCUCAUGCGGcugcuggaccgccGCGgccuggacgagguGCGCCUGGGC-UCc -3'
miRNA:   3'- aGAGUACGCC-------------UGU-------------UGCGGGCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 141302 0.7 0.739113
Target:  5'- gCagGUGCGGGCGGCGCcCCGGaGCc-- -3'
miRNA:   3'- aGagUACGCCUGUUGCG-GGCC-CGuag -5'
14630 5' -57.2 NC_003521.1 + 138332 0.66 0.933046
Target:  5'- cCUgCGgcUGCGcGACGGCGUCuCGGGCcUCu -3'
miRNA:   3'- aGA-GU--ACGC-CUGUUGCGG-GCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 135925 0.67 0.899826
Target:  5'- cCUCGgccacggccGCGGgauguGCGACGCCuCGGGCGc- -3'
miRNA:   3'- aGAGUa--------CGCC-----UGUUGCGG-GCCCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.